Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamyltranspeptidase / glutathione hydrolase | SAMN05421639_102157 | Not Available | Positive | 1392031 - 1393719 | 61470.9 |
| aerobic c4-dicarboxylate transport protein | SAMN05421639_102158 | Not Available | Positive | 1394034 - 1395314 | 46272.4 |
| lipid kinase, yegs/rv2252/bmru family | SAMN05421639_102159 | Not Available | Negative | 1395452 - 1396342 | 33526.3 |
| protein of unknown function | SAMN05421639_102160 | Not Available | Negative | 1396347 - 1397207 | 32345.4 |
| protein of unknown function | SAMN05421639_102161 | Not Available | Negative | 1397253 - 1398125 | 33071.2 |
| hypothetical protein | SAMN05421639_102162 | Not Available | Negative | 1398392 - 1398817 | 16038.8 |
| dna gyrase subunit b | SAMN05421639_102163 | Not Available | Negative | 1398902 - 1400836 | 71661.5 |
| helix-turn-helix domain-containing protein | SAMN05421639_102164 | Not Available | Negative | 1401044 - 1401475 | 16756.2 |
| cytochrome bd-i ubiquinol oxidase subunit 1 apoprotein | SAMN05421639_102165 | Not Available | Positive | 1401734 - 1403077 | 50001.6 |
| cytochrome bd-i ubiquinol oxidase subunit 2 apoprotein | SAMN05421639_102166 | Not Available | Positive | 1403074 - 1404078 | 37465.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
