Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent ferric siderophore reductase, contains fad-binding and sip domains | SAMN05421639_102106 | Not Available | Negative | 1344067 - 1344879 | 30522.1 |
| iron complex outermembrane recepter protein | SAMN05421639_102107 | Not Available | Negative | 1344984 - 1347194 | 81296.2 |
| hypothetical protein | SAMN05421639_102108 | Not Available | Negative | 1347855 - 1349447 | 60840.9 |
| membrane fusion protein, multidrug efflux system | SAMN05421639_102109 | Not Available | Negative | 1349596 - 1350708 | 40921.8 |
| outer membrane protein tolc | SAMN05421639_102110 | Not Available | Negative | 1350732 - 1352042 | 48699.4 |
| arac-type dna-binding protein | SAMN05421639_102111 | Not Available | Negative | 1352132 - 1352977 | 32979.7 |
| protein of unknown function | SAMN05421639_102112 | Not Available | Negative | 1353017 - 1354084 | 41094.2 |
| protein of unknown function | SAMN05421639_102113 | Not Available | Positive | 1354246 - 1355166 | 34433.4 |
| hypothetical protein | SAMN05421639_102114 | Not Available | Negative | 1355231 - 1355608 | 14208.7 |
| 16s rrna (cytidine1402-2'-o)-methyltransferase | SAMN05421639_102115 | Not Available | Negative | 1355734 - 1356432 | 26489.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
