Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (guanosine2251-2'-o)-methyltransferase | SAMN05421639_1011121 | Not Available | Positive | 1216931 - 1217695 | 28016.0 |
| hypothetical protein | SAMN05421639_1011122 | Not Available | Positive | 1217797 - 1218846 | 37646.1 |
| hypothetical protein | SAMN05421639_1011123 | Not Available | Positive | 1219006 - 1219236 | 9434.16 |
| membrane protein yfho | SAMN05421639_1011124 | Not Available | Positive | 1219267 - 1221807 | 95777.9 |
| hypothetical protein | SAMN05421639_1011125 | Not Available | Positive | 1221927 - 1223228 | 49829.6 |
| Trna-ser | Not Available | Not Available | Positive | 1223654 - 1223741 | Not Available |
| hypothetical protein | SAMN05421639_1022 | Not Available | Negative | 1223955 - 1224182 | 8584.28 |
| hypothetical protein | SAMN05421639_1023 | Not Available | Negative | 1224314 - 1224703 | 14944.9 |
| thioredoxin reductase (nadph) | SAMN05421639_1024 | Not Available | Negative | 1226369 - 1227310 | 33897.4 |
| hypothetical protein | SAMN05421639_1025 | Not Available | Negative | 1227752 - 1228645 | 33948.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
