Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ca-activated chloride channel family protein | SAMN05421639_1011111 | Not Available | Negative | 1207190 - 1208197 | 37676.6 |
| ca-activated chloride channel family protein | SAMN05421639_1011112 | Not Available | Negative | 1208197 - 1209189 | 36784.0 |
| hypothetical protein | SAMN05421639_1011113 | Not Available | Negative | 1209182 - 1209991 | 31213.7 |
| protein of unknown function duf58 | SAMN05421639_1011114 | Not Available | Negative | 1210123 - 1211031 | 34790.0 |
| l-amino acid n-acyltransferase ynca | SAMN05421639_1011115 | Not Available | Negative | 1211061 - 1211519 | 17690.2 |
| moxr-like atpase | SAMN05421639_1011116 | Not Available | Negative | 1211519 - 1212523 | 37663.9 |
| hypothetical protein | SAMN05421639_1011117 | Not Available | Negative | 1212820 - 1214118 | 46249.2 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421639_1011118 | Not Available | Positive | 1214251 - 1215585 | 49613.9 |
| dinb superfamily protein | SAMN05421639_1011119 | Not Available | Positive | 1215721 - 1216329 | 24048.1 |
| hypothetical protein | SAMN05421639_1011120 | Not Available | Positive | 1216337 - 1216906 | 21964.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
