Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uracil-dna glycosylase | SAMN05421639_1011090 | Not Available | Negative | 1188087 - 1188728 | 24332.1 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN05421639_1011091 | Not Available | Negative | 1188881 - 1189918 | 40360.3 |
| ribosomal-protein-alanine n-acetyltransferase | SAMN05421639_1011092 | Not Available | Negative | 1189929 - 1190438 | 19492.5 |
| dna mismatch repair protein muts2 | SAMN05421639_1011093 | Not Available | Positive | 1190572 - 1192719 | 82797.1 |
| abc-type lipopolysaccharide export system, atpase component | SAMN05421639_1011094 | Not Available | Positive | 1193046 - 1193774 | 27562.9 |
| hypothetical protein | SAMN05421639_1011095 | Not Available | Positive | 1193924 - 1194721 | 30340.6 |
| hypothetical protein | SAMN05421639_1011097 | Not Available | Negative | 1194922 - 1195044 | 4539.61 |
| acyl-coa hydrolase | SAMN05421639_1011098 | Not Available | Positive | 1195068 - 1195451 | 14425.5 |
| putative hydrolases of hd superfamily | SAMN05421639_1011099 | Not Available | Negative | 1195538 - 1196128 | 22731.2 |
| hypothetical protein | SAMN05421639_1011100 | Not Available | Negative | 1196141 - 1196821 | 25589.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
