Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gliding motility-associated lipoprotein gldj | SAMN05421639_1011030 | Not Available | Negative | 1127798 - 1129399 | 61026.6 |
| peptidase family c25 | SAMN05421639_1011031 | Not Available | Positive | 1129564 - 1133463 | 144884.0 |
| hypothetical protein | SAMN05421639_1011032 | Not Available | Positive | 1133524 - 1134687 | 42160.6 |
| uncharacterized membrane protein yccc | SAMN05421639_1011033 | Not Available | Positive | 1135010 - 1137274 | 86479.3 |
| 4'-phosphopantetheinyl transferase superfamily protein | SAMN05421639_1011034 | Not Available | Negative | 1137255 - 1137869 | 24437.2 |
| hypothetical protein | SAMN05421639_1011035 | Not Available | Negative | 1138058 - 1138588 | 19672.4 |
| adenosylhomocysteinase | SAMN05421639_1011036 | Not Available | Positive | 1138756 - 1140069 | 48224.7 |
| uncharacterized membrane protein yiaa | SAMN05421639_1011037 | Not Available | Positive | 1140433 - 1140825 | 14381.8 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | SAMN05421639_1011038 | Not Available | Negative | 1140906 - 1141409 | 17595.4 |
| hypothetical protein | SAMN05421639_1011039 | Not Available | Positive | 1142020 - 1143174 | 40863.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
