Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane fusion protein, multidrug efflux system | SAMN05421639_1011020 | Not Available | Negative | 1117399 - 1118502 | 40037.7 |
| outer membrane protein tolc | SAMN05421639_1011021 | Not Available | Negative | 1118517 - 1119836 | 48202.2 |
| transcriptional regulator, tetr family | SAMN05421639_1011022 | Not Available | Negative | 1119820 - 1120446 | 24653.5 |
| dna polymerase-3 subunit delta' | SAMN05421639_1011023 | Not Available | Negative | 1120886 - 1122004 | 43118.4 |
| hypothetical protein | SAMN05421639_1011024 | Not Available | Positive | 1122437 - 1123762 | 49466.6 |
| lps export abc transporter protein lptc | SAMN05421639_1011025 | Not Available | Positive | 1123764 - 1124360 | 22678.1 |
| anhydro-n-acetylmuramic acid kinase | SAMN05421639_1011026 | Not Available | Positive | 1124362 - 1125405 | 38609.2 |
| hypothetical protein | SAMN05421639_1011027 | Not Available | Negative | 1125435 - 1125824 | 14728.8 |
| adp-ribose pyrophosphatase yjhb, nudix family | SAMN05421639_1011028 | Not Available | Positive | 1125861 - 1126472 | 23849.5 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | SAMN05421639_1011029 | Not Available | Negative | 1126465 - 1127736 | 47411.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
