Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative nadph-quinone reductase (modulator of drug activity b) | SAMN05421639_1011010 | Not Available | Negative | 1109818 - 1110348 | 20994.0 |
| transcriptional regulator, hxlr family | SAMN05421639_1011011 | Not Available | Positive | 1110442 - 1110834 | 15153.7 |
| hypothetical protein | SAMN05421639_1011012 | Not Available | Positive | 1111007 - 1111453 | 17807.7 |
| hypothetical protein | SAMN05421639_1011013 | Not Available | Positive | 1111497 - 1112006 | 18474.2 |
| dna-3-methyladenine glycosylase i | SAMN05421639_1011014 | Not Available | Negative | 1112052 - 1112603 | 21644.0 |
| hypothetical protein | SAMN05421639_1011015 | Not Available | Negative | 1112600 - 1112920 | 12433.8 |
| proline iminopeptidase | SAMN05421639_1011016 | Not Available | Positive | 1113072 - 1113986 | 34750.2 |
| hypothetical protein | SAMN05421639_1011017 | Not Available | Positive | 1114004 - 1114390 | 14425.5 |
| thiosulfate dehydrogenase | SAMN05421639_1011018 | Not Available | Positive | 1114444 - 1115457 | 37473.0 |
| mfs transporter, dha2 family, multidrug resistance protein | SAMN05421639_1011019 | Not Available | Negative | 1115690 - 1117264 | 57693.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
