Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421639_101990 | Not Available | Negative | 1089104 - 1090129 | 38523.6 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN05421639_101991 | Not Available | Negative | 1090244 - 1090810 | 22537.0 |
| xaa-pro aminopeptidase | SAMN05421639_101992 | Not Available | Negative | 1091272 - 1093041 | 66310.8 |
| hypothetical protein | SAMN05421639_101993 | Not Available | Positive | 1093455 - 1093940 | 19395.7 |
| hypothetical protein | SAMN05421639_101994 | Not Available | Positive | 1093962 - 1094129 | 6180.98 |
| dna topoisomerase-1 | SAMN05421639_101995 | Not Available | Positive | 1094139 - 1095245 | 42614.5 |
| hypothetical protein | SAMN05421639_101996 | Not Available | Negative | 1095434 - 1095940 | 19826.2 |
| delta-1-pyrroline-5-carboxylate dehydrogenase | SAMN05421639_101997 | Not Available | Positive | 1096083 - 1097708 | 59793.9 |
| hypothetical protein | SAMN05421639_101998 | Not Available | Positive | 1097993 - 1098202 | 6907.38 |
| hypothetical protein | SAMN05421639_101999 | Not Available | Positive | 1098242 - 1098412 | 6850.52 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
