Candidatus Berkiella aquae

CoccusMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Candidatus Berkiellales

Family

Candidatus Berkiellaceae

Genus

Candidatus Berkiella

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCandidatus Berkiellales
FamilyCandidatus Berkiellaceae
GenusCandidatus Berkiella
SpeciesCandidatus Berkiella aquae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCoccus
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathuman-constructed water systems; outdoor hot tub spa
Biotic relationshipNot Available
Host(s)Amoeba
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Berkiella aquae strain HT99 HT99_03, whole genome

Gene Summary

Adenine Count

1087235 bp

Thymine Count

1085813 bp

Guanine Count

708094 bp

Cytosine Count

707565 bp

Genome Length

3588707 bp

Protein-coding Genes

3131 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trk system potassium transporter trkaHT99x_000055E1V6C6Negative13132 - 1450249888.4
16s rrna (cytosine(967)-c(5))-methyltransferase rsmbHT99x_000060Q88RR3Negative14518 - 1581348307.7
methionyl-trna formyltransferaseHT99x_000065A1TWN0Negative15815 - 1675033769.2
peptide deformylaseHT99x_000070Q5QXI5Negative16747 - 1724718471.6
lysm peptidoglycan-binding domain-containing proteinHT99x_000075Not AvailablePositive17396 - 1854443182.4
dna-processing protein dpraHT99x_000080P30852Positive18639 - 1968537692.4
duf494 domain-containing proteinHT99x_000085Q3J6U3Positive19688 - 2017018163.9
type i dna topoisomeraseHT99x_000090Q87AQ6Positive20207 - 2249586269.5
oxygen-dependent coproporphyrinogen oxidaseHT99x_000095A0KEX7Positive22536 - 2344735397.6
hypothetical proteinHT99x_000100Not AvailableNegative23448 - 26186101743.0

Displaying genes 11 – 20 of 3179 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

142 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 142 metabolites

Health Effects

No health effects information available for this bacterium.