Alkaliphilus metalliredigens QYMF

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Natronincolaceae

Genus

Alkaliphilus

Description

Alkaliphilus metalliredigens (strain QYMF) is s an alkaliphilic, moderately halophilic metal-reducing bacterium phylogenetically associated with the Firmicutes. A. metalliredigens was isolated from borax leachate ponds. Alkaliphilus metalliredigens can reduce Fe(III)-citrate, Fe(III)-EDTA, Co(III)-EDTA, or Cr(VI) as electron acceptors with yeast extract or lactate as electron donors. Growth during iron reduction occurs over the pH range of 7.5 to 11.0, a sodium chloride range of 0 to 80 g/l and a temperature range of 4 degrees Celsius to 45 degrees Celsius. Optimal growth conditions during iron reduction in the presence of borate (2 g/l) were observed at a pH of 9.6, a sodium chloride concentration of 20 g/l and a temperature of approximately 35 degrees Celsius. A. metalliredigens is a strict anaerobe that can tolerate up to 1.5% (w/v) borax (Na2B4O7), and the cells are straight rods that produce endospores. The microorganism appears to be a novel metal-reducing bacterium that is distantly related to other commonly studied iron-reducing microorganisms. At the present time (December 2007), the most closely related microorganisms are Alkaliphilus transvaalensis and Alkaliphilus crotonatoxidans. (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyNatronincolaceae
GenusAlkaliphilus
SpeciesAlkaliphilus metalliredigens
StrainQYMF

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Alkaliphilus metalliredigens QYMF
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature35
Temperature rangeMesophilic
HabitatPonds
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Alkaliphilus metalliredigens QYMF, complete sequence.

Gene Summary

Adenine Count

1558517 bp

Thymine Count

1555883 bp

Guanine Count

912968 bp

Cytosine Count

902198 bp

Genome Length

4929566 bp

Protein-coding Genes

4729 genes

Non-Coding Genes

299 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nickel pincer cofactor biosynthesis protein larbAMET_RS02415F9UST0Positive495476 - 49622826981.7
nickel pincer cofactor biosynthesis protein larcAMET_RS02420A6TKJ0Positive496221 - 49748646931.1
atp-dependent sacrificial sulfur transferase lareAMET_RS02425P73846Positive497536 - 49834830920.7
m20/m25/m40 family metallo-hydrolaseAMET_RS02430Not AvailablePositive498533 - 50019162926.6
adp-forming succinate--coa ligase subunit betaAMET_RS02435A6TKJ3Positive500230 - 50142343101.4
succinate--coa ligase subunit alphaAMET_RS02440P80865Positive501407 - 50230931453.6
mota/tolq/exbb proton channel family proteinAMET_RS02445Not AvailablePositive502447 - 50346937710.4
ompa family proteinAMET_RS02450Not AvailablePositive503500 - 50444436124.7
sensor histidine kinaseAMET_RS02455Not AvailablePositive504719 - 50643165437.9
response regulator transcription factorAMET_RS02460P0AF30Positive506428 - 50704523325.3

Displaying genes 731 – 740 of 5028 in total

Metabolites

284 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da

Displaying 1–10 of 284 metabolites

Health Effects

No health effects information available for this bacterium.