Sphingopyxis sp. 113P3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. 113P3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. 113P3 chromosome, complete genome.

Gene Summary

Adenine Count

792758 bp

Thymine Count

796672 bp

Guanine Count

1421511 bp

Cytosine Count

1409835 bp

Genome Length

4420776 bp

Protein-coding Genes

4174 genes

Non-Coding Genes

132 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenaseLH20_RS15120Not AvailableNegative3112852 - 311396439539.7
l-serine ammonia-lyaseLH20_RS15125Not AvailableNegative3113990 - 311536948088.6
superoxide dismutaseLH20_RS15130Not AvailableNegative3115609 - 311622622390.9
cisplatin damage response atp-dependent dna ligaseLH20_RS15135Not AvailableNegative3116328 - 311791158366.8
ligase-associated dna damage response exonucleaseLH20_RS15140Not AvailableNegative3117908 - 311892137388.8
udgx family uracil-dna binding proteinLH20_RS15145Not AvailableNegative3118921 - 312034552786.4
putative dna modification/repair radical sam proteinLH20_RS15150Not AvailableNegative3120342 - 312159246205.9
gaf domain-containing proteinLH20_RS15155Not AvailableNegative3121648 - 312318656882.5
response regulatorLH20_RS15160Not AvailablePositive3123394 - 312418528780.1
dinb family proteinLH20_RS15165Not AvailableNegative3124200 - 312468518077.6

Displaying genes 3091 – 3100 of 4549 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000523nonane-4,6-dioneC9H16O2Chemical structure of nonane-4,6-dioneNot available
Average156.225Da
Monoisotopic156.115029755Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0040407Sphingopyxis sp. 113P3Not availableNot availableNot available

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.