Symbiobacterium thermophilum IAM 14863

Gram-positiveRodNon-motileMicroaerophilic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Symbiobacteriaceae

Genus

Symbiobacterium

Description

Symbiobacterium thermophilum is an uncultivable bacterium isolated from compost that depends on microbial commensalism. The Gram-stain result indicates that S.thermophilum is Gram-negative whereas the results of the 16S ribosomal DNA phylogenic study indicates that it belongs to the Gram-positive group. Proteins associated with the S-layer have been identified in S.thermophilum and Gram variability was observed in several S-layer-coated bacteria.(From http://www.expasy.org/sprot/hamap/SYMTH.html) (BacMap)

Taxonomy

Kingdom	Bacillati
Phylum	Bacillota
Class	Clostridia
Order	Eubacteriales
Family	Symbiobacteriaceae
Genus	Symbiobacterium
Species	Symbiobacterium thermophilum
Strain	IAM 14863

Profile

Physiology
Gram staining properties	Positive
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	Not Available

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Microaerophilic
Optimal temperature	60
Temperature range	Thermophilic
Habitat	Terrestrial
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Not Available
Pathogenicity	No

Genome Summary

Symbiobacterium thermophilum IAM 14863, complete sequence.

NC_006177.1

Gene Summary

Adenine Count

559574 bp

Thymine Count

557753 bp

Guanine Count

1223020 bp

Cytosine Count

1225788 bp

Genome Length

3566135 bp

Protein-coding Genes

3265 genes

Non-Coding Genes

118 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
Trna-leu	Not Available	Not Available	Positive	2950849 - 2950932	Not Available
Trna-glu	Not Available	Not Available	Positive	2950980 - 2951055	Not Available
Trna-gln	Not Available	Not Available	Positive	2951061 - 2951134	Not Available
5s ribosomal rna	Not Available	Not Available	Positive	2951247 - 2951354	Not Available
23s ribosomal rna	Not Available	Not Available	Positive	2951403 - 2954347	Not Available
16s ribosomal rna	Not Available	Not Available	Positive	2954638 - 2956202	Not Available
oligopeptide abc transporter permease	STH_RS13660	Not Available	Negative	2957118 - 2957948	29997.3
abc transporter permease	STH_RS13665	Not Available	Negative	2957965 - 2958930	34701.5
peptide-binding protein	STH_RS13670	Not Available	Negative	2958996 - 2960840	67428.8
new3 domain-containing protein	STH_RS13675	Not Available	Negative	2962175 - 2964742	93257.2

Displaying genes 2771 – 2780 of 3383 in total

Pathways

415 pathways

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lipoic Acid Metabolism

Lysine Biosynthesis

Taurine Metabolism

Glycolysis and Pyruvate Dehydrogenase

Arginine Metabolism

Ornithine Metabolism

Show All 415 Pathways

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P	Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000250	2,5-didehydro-D-gluconateC6H7O7	`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000253	2-oxopent-4-enoateC5H5O3	Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5	Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000377	(S)-malateC4H4O5	Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000516	6-deoxyerythronolide BC21H38O6	Not available	Average386.5228Da Monoisotopic386.2668389Da
BASm0000592	(S)-1-phenylethanolC8H10O	Not available	Average122.1644Da Monoisotopic122.0731649Da
BASm0000893	crotonobetaineC7H13NO2	`927-89-9`	Average143.1836Da Monoisotopic143.0946287Da
BASm0000989	GlycerolC3H8O3	`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da

Displaying 1–10 of 333 metabolites

Health Effects

No health effects information available for this bacterium.