Symbiobacterium thermophilum IAM 14863

Gram-positiveRodNon-motileMicroaerophilic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Symbiobacteriaceae

Genus

Symbiobacterium

Description

Symbiobacterium thermophilum is an uncultivable bacterium isolated from compost that depends on microbial commensalism. The Gram-stain result indicates that S.thermophilum is Gram-negative whereas the results of the 16S ribosomal DNA phylogenic study indicates that it belongs to the Gram-positive group. Proteins associated with the S-layer have been identified in S.thermophilum and Gram variability was observed in several S-layer-coated bacteria.(From http://www.expasy.org/sprot/hamap/SYMTH.html) (BacMap)

Taxonomy

Kingdom	Bacillati
Phylum	Bacillota
Class	Clostridia
Order	Eubacteriales
Family	Symbiobacteriaceae
Genus	Symbiobacterium
Species	Symbiobacterium thermophilum
Strain	IAM 14863

Profile

Physiology
Gram staining properties	Positive
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	Not Available

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Microaerophilic
Optimal temperature	60
Temperature range	Thermophilic
Habitat	Terrestrial
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Not Available
Pathogenicity	No

Genome Summary

Symbiobacterium thermophilum IAM 14863, complete sequence.

NC_006177.1

Gene Summary

Adenine Count

559574 bp

Thymine Count

557753 bp

Guanine Count

1223020 bp

Cytosine Count

1225788 bp

Genome Length

3566135 bp

Protein-coding Genes

3265 genes

Non-Coding Genes

118 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
glutamate 5-kinase	STH_RS12635	Not Available	Negative	2724430 - 2725218	28007.9
atp-dependent zinc metalloprotease ftsh	STH_RS12640	Not Available	Negative	2725486 - 2727282	64614.9
citrate (si)-synthase	STH_RS12645	Not Available	Negative	2727518 - 2728837	49812.7
malate dehydrogenase	STH_RS12650	Not Available	Negative	2728872 - 2729819	33230.6
isocitrate dehydrogenase (nadp(+))	STH_RS12655	Not Available	Negative	2729853 - 2731118	46543.1
hypothetical protein	STH_RS12660	Not Available	Negative	2731500 - 2732414	29421.3
class i sam-dependent methyltransferase	STH_RS17465	Not Available	Positive	2732581 - 2733387	28936.7
arsr/smtb family transcription factor	STH_RS17470	Not Available	Positive	2733472 - 2734095	23148.5
hypothetical protein	STH_RS12675	Not Available	Positive	2734162 - 2734404	8222.68
hypothetical protein	STH_RS12680	Not Available	Negative	2734511 - 2734918	14338.8

Displaying genes 2561 – 2570 of 3383 in total

Pathways

288 pathways

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lipoic Acid Metabolism

Lysine Biosynthesis

Taurine Metabolism

Glycolysis and Pyruvate Dehydrogenase

Arginine Metabolism

Ornithine Metabolism

Show All 288 Pathways

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P	Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000250	2,5-didehydro-D-gluconateC6H7O7	`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000253	2-oxopent-4-enoateC5H5O3	Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5	Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000377	(S)-malateC4H4O5	Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000516	6-deoxyerythronolide BC21H38O6	Not available	Average386.5228Da Monoisotopic386.2668389Da
BASm0000592	(S)-1-phenylethanolC8H10O	Not available	Average122.1644Da Monoisotopic122.0731649Da
BASm0000893	crotonobetaineC7H13NO2	`927-89-9`	Average143.1836Da Monoisotopic143.0946287Da
BASm0000989	GlycerolC3H8O3	`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da

Displaying 1–10 of 333 metabolites

Health Effects

No health effects information available for this bacterium.