Symbiobacterium thermophilum IAM 14863

Gram-positiveRodNon-motileMicroaerophilic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Symbiobacteriaceae

Genus

Symbiobacterium

Description

Symbiobacterium thermophilum is an uncultivable bacterium isolated from compost that depends on microbial commensalism. The Gram-stain result indicates that S.thermophilum is Gram-negative whereas the results of the 16S ribosomal DNA phylogenic study indicates that it belongs to the Gram-positive group. Proteins associated with the S-layer have been identified in S.thermophilum and Gram variability was observed in several S-layer-coated bacteria.(From http://www.expasy.org/sprot/hamap/SYMTH.html) (BacMap)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilySymbiobacteriaceae
GenusSymbiobacterium
SpeciesSymbiobacterium thermophilum
StrainIAM 14863

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Symbiobacterium thermophilum IAM 14863
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature60
Temperature rangeThermophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Symbiobacterium thermophilum IAM 14863, complete sequence.

Gene Summary

Adenine Count

559574 bp

Thymine Count

557753 bp

Guanine Count

1223020 bp

Cytosine Count

1225788 bp

Genome Length

3566135 bp

Protein-coding Genes

3265 genes

Non-Coding Genes

118 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nudix domain-containing proteinSTH_RS17165Not AvailablePositive1775171 - 177631640599.9
30s ribosomal protein s12 methylthiotransferase rimoSTH_RS08230Not AvailablePositive1776419 - 177787654097.2
cys-trna(pro) deacylaseSTH_RS08235Not AvailablePositive1777942 - 177840917022.9
m28 family metallopeptidaseSTH_RS08240Not AvailablePositive1778527 - 177969042587.7
gtp pyrophosphokinase family proteinSTH_RS17170Not AvailableNegative1779771 - 178089542601.3
hypothetical proteinSTH_RS19360Not AvailablePositive1781244 - 178179519202.2
aaa family atpaseSTH_RS08255Not AvailablePositive1781792 - 178332155416.1
hypothetical proteinSTH_RS08260Not AvailableNegative1783374 - 178414127440.1
gerab/arcd/proy family transporterSTH_RS08265Not AvailableNegative1784175 - 178529040325.9
ger(x)c family spore germination proteinSTH_RS08270Not AvailableNegative1785299 - 178645642724.4

Displaying genes 1661 – 1670 of 3383 in total

Metabolites

333 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 333 metabolites

Health Effects

No health effects information available for this bacterium.