Thiobacillus denitrificans ATCC 25259

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Thiobacillaceae

Genus

Thiobacillus

Description

Thiobacillus denitrificans is an obligate chemolithoautotrophic, facultative anaerobe bacterium. It is best known for its ability to couple the oxidation of inorganic sulfur compounds (such as hydrogen sulfide and thiosulfate) to denitrification. It is a natural agent for intrisic bioremediation of groundwater polluted with nitrate. In addition, it has been used in engineered water treatment systems for nitrate removal. Its ability to carry out nitrate-dependent Fe(II) oxidation under anaerobic conditions could influence metal and radionuclide transport in the subsurface, as ferric iron-containing minerals that may be formed, especially iron(III) oxides, are well-known for their ability to adsorb heavy metals and radionuclides, such as uranium. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilyThiobacillaceae
GenusThiobacillus
SpeciesThiobacillus denitrificans
StrainATCC 25259

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Thiobacillus denitrificans ATCC 25259
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceLithotroph - Chemolithotroph
PathogenicityNo

Genome Summary

Thiobacillus denitrificans ATCC 25259, complete sequence.

Gene Summary

Adenine Count

493825 bp

Thymine Count

493554 bp

Guanine Count

961807 bp

Cytosine Count

960623 bp

Genome Length

2909809 bp

Protein-coding Genes

2834 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1-deoxy-d-xylulose-5-phosphate reductoisomeraseTBD_RS04015Not AvailablePositive833188 - 83437241530.1
rip metalloprotease rsepTBD_RS04020Not AvailablePositive834369 - 83572148847.5
outer membrane protein assembly factor bamaTBD_RS04025Not AvailablePositive835730 - 83803084891.6
omph family outer membrane proteinTBD_RS04030Not AvailablePositive838055 - 83855819144.0
udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferaseTBD_RS04035Not AvailablePositive838568 - 83959935726.8
3-hydroxyacyl-acp dehydratase fabzTBD_RS04040Not AvailablePositive839596 - 84003916373.2
acyl-acp--udp-n-acetylglucosamine o-acyltransferaseTBD_RS04045Not AvailablePositive840041 - 84081727707.2
lipid-a-disaccharide synthaseTBD_RS04050Not AvailablePositive840829 - 84194740191.3
ribonuclease hiiTBD_RS04055Not AvailablePositive841944 - 84255821958.7
duf4149 domain-containing proteinTBD_RS04060Not AvailablePositive842569 - 84302416559.2

Displaying genes 811 – 820 of 2887 in total

Metabolites

1778 records
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Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1778 metabolites

Health Effects

No health effects information available for this bacterium.