Micromonospora rifamycinica

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micromonosporales

Family

Micromonosporaceae

Genus

Micromonospora

Description

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusMicromonospora
SpeciesMicromonospora rifamycinica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Micromonospora rifamycinica strain DSM 44983 chromosome I.

Gene Summary

Adenine Count

950843 bp

Thymine Count

942940 bp

Guanine Count

2557916 bp

Cytosine Count

2559570 bp

Genome Length

7011369 bp

Protein-coding Genes

5900 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf4081 domain-containing gnat family n-acetyltransferaseGA0070623_RS11025Not AvailableNegative2732027 - 273286630651.9
padr family transcriptional regulatorGA0070623_RS11030Not AvailablePositive2732995 - 273359421435.2
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseGA0070623_RS11035Not AvailableNegative2733685 - 273485740922.6
m50 family metallopeptidaseGA0070623_RS11040Not AvailableNegative2734866 - 273610744318.3
1-deoxy-d-xylulose-5-phosphate reductoisomeraseGA0070623_RS11045Not AvailableNegative2736107 - 273731842218.5
uma2 family endonucleaseGA0070623_RS11050Not AvailableNegative2737362 - 273812327277.9
duf397 domain-containing proteinGA0070623_RS11055Not AvailableNegative2738671 - 27388777186.38
helix-turn-helix transcriptional regulatorGA0070623_RS11060Not AvailableNegative2738868 - 273967429878.7
hypothetical proteinGA0070623_RS30955Not AvailablePositive2740170 - 274061015276.3
polysaccharide lyase family 1 proteinGA0070623_RS11070Not AvailableNegative2740713 - 274228753640.0

Displaying genes 2201 – 2210 of 5967 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034715-amino-6-(5-phospho-D-ribosylamino)uracilC9H13N4O9PChemical structure of 5-amino-6-(5-phospho-D-ribosylamino)uracilNot available
Average352.197Da
Monoisotopic352.0431122Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.