Algoriphagus yeomjeoni str. DSM 23446

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cyclobacteriaceae

Genus

Algoriphagus

Description

Algoriphagus yeomjeoni strain DSM 23446 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This microbe thrives optimally at a temperature of 29.0°C, suggesting a potential preference for moderate environmental conditions. Its Gram-negative classification indicates the presence of an outer membrane, which may contribute to its adaptability in various aquatic environments. As an aerobic organism, A. yeomjeoni relies on oxygen for its metabolic processes, which could influence its distribution in oxygen-rich niches, such as coastal waters or sediment layers. The specific environmental conditions under which this bacterium flourishes could provide insights into its ecological role, particularly in biogeochemical cycles involving nitrogen or carbon, given the importance of aerobic respiration in these processes. The isolation of A. yeomjeoni from its native milieu may reflect its adaptation to specific ecological settings, potentially linking it to organic matter degradation or nutrient cycling in marine environments. Further research into its metabolic capabilities and interactions with other microorganisms could elucidate its function within microbial communities and its contribution to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCyclobacteriaceae
GenusAlgoriphagus
SpeciesAlgoriphagus yeomjeoni
StrainDSM 23446

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Algoriphagus yeomjeoni strain DSM 23446

Gene Summary

Adenine Count

1478414 bp

Thymine Count

1490615 bp

Guanine Count

996609 bp

Cytosine Count

1005554 bp

Genome Length

4976181 bp

Protein-coding Genes

4232 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
xaa-pro aminopeptidaseLV83_02942Not AvailableNegative3421451 - 342274349102.9
putative zn-dependent peptidaseLV83_02943Not AvailablePositive3422864 - 342409346688.0
putative o-methyltransferase yrrmLV83_02944Not AvailablePositive3424096 - 342474024175.5
membrane-bound lytic murein transglycosylase dLV83_02945Not AvailablePositive3424807 - 342639659113.3
protein of unknown function (duf3078)LV83_02946Not AvailablePositive3426421 - 342741337108.2
dna polymerase-3 subunit gamma/tauLV83_02947Not AvailableNegative3427410 - 342791019220.2
dna polymerase-3 subunit gamma/tauLV83_02948Not AvailableNegative3427985 - 342913043058.8
Tmrna,resume consensus sequence (at 87): tataaatggcgaagaatcNot AvailableNot AvailablePositive3429370 - 3429770Not Available
site-specific recombinase xerdLV83_02950Not AvailablePositive3430131 - 343134547170.2
hypothetical proteinLV83_02951Not AvailablePositive3432102 - 343251514990.2

Displaying genes 2941 – 2950 of 4280 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.