Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Oxalobacteraceae
Genus
Collimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Oxalobacteraceae |
| Genus | Collimonas |
| Species | Collimonas arenae |
| Strain | Cal35 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Collimonas arenae strain Cal35 plasmid unnamed, complete sequence.
Gene Summary
Adenine Count
10301 bp
Thymine Count
10196 bp
Guanine Count
10010 bp
Cytosine Count
10933 bp
Genome Length
41440 bp
Protein-coding Genes
51 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid iv(a) 3-deoxy-d-manno-octulosonic acid transferase | LT85_RS04635 | Not Available | Positive | 1034336 - 1035691 | 49255.9 |
| ydcf family protein | LT85_RS04640 | Not Available | Positive | 1035688 - 1036446 | 27588.9 |
| glycosyltransferase family 8 protein | LT85_RS04645 | Not Available | Positive | 1036707 - 1037708 | 38217.2 |
| o-antigen ligase family protein | LT85_RS04650 | Not Available | Positive | 1037833 - 1039086 | 47308.0 |
| udp-glucose 4-epimerase gale | LT85_RS04655 | Not Available | Negative | 1039284 - 1040306 | 37049.1 |
| efflux transporter outer membrane subunit | LT85_RS04660 | Not Available | Negative | 1040445 - 1041872 | 51512.0 |
| efflux rnd transporter permease subunit | LT85_RS04665 | Not Available | Negative | 1041865 - 1045017 | 112194.0 |
| efflux rnd transporter periplasmic adaptor subunit | LT85_RS04670 | Not Available | Negative | 1045029 - 1046252 | 42001.1 |
| tetr family transcriptional regulator | LT85_RS04675 | Not Available | Positive | 1046519 - 1047163 | 24494.5 |
| tolc family outer membrane protein | LT85_RS04680 | Not Available | Negative | 1047227 - 1048531 | 46703.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.