Microbacterium hydrocarbonoxydans

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium hydrocarbonoxydans
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatcrude-oil contaminated soil; oil contaminated soil; permafrost
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium hydrocarbonoxydans strain SA35 RS84_contig000010,

Gene Summary

Adenine Count

623085 bp

Thymine Count

621567 bp

Guanine Count

1356011 bp

Cytosine Count

1352922 bp

Genome Length

3953585 bp

Protein-coding Genes

3652 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
general stress protein 14RS84_01004A0A481WNM5Positive1039142 - 103992428949.1
carboxylesterase nlhhRS84_01005P9WK86Positive1040070 - 104103834859.2
hypothetical proteinRS84_01006Not AvailablePositive1041103 - 104208934339.1
cephalosporin-c deacetylaseRS84_01007Q9WXT2Negative1042229 - 104320034633.4
putative hth-type transcriptional repressor exurRS84_01008B2VEM5Negative1043246 - 104427436468.5
ribose operon repressorRS84_01009P0ACQ2Negative1044271 - 104530537687.9
multiple sugar-binding protein precursorRS84_01010Q9K491Positive1045589 - 104690247369.9
sn-glycerol-3-phosphate transport system permease protein ugpaRS84_01011Q00750Positive1046944 - 104791235458.3
l-arabinose transport system permease protein araqRS84_01012Not AvailablePositive1047909 - 104880532669.7
exo-beta-d-glucosaminidase precursorRS84_01013Q2TXB7Positive1048802 - 105128591255.1

Displaying genes 1001 – 1010 of 3713 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

263 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 263 metabolites

Health Effects

No health effects information available for this bacterium.