Methylorubrum extorquens AM1 str. DM4

Gram-negativeRodMotileFacultative aerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylorubrum

Description

Methylorubrum extorquens AM1 str. DM4 is a Gram-negative, rod-shaped bacterium capable of methylotrophic metabolism, utilizing methanol and other one-carbon compounds as its primary energy sources. This organism can be found in diverse habitats, reflecting its adaptability and ecological versatility. Typically, M. extorquens AM1 str. DM4 exists in cell arrangements that include single cells and pairs, facilitating various forms of growth and interaction within its environment. The optimal growth temperature for this strain is approximately 25.0°C, indicating a preference for moderate temperature conditions. As a facultative aerobe, M. extorquens AM1 str. DM4 can thrive in both aerobic and anaerobic environments, allowing it to exploit a wide range of ecological niches. This flexibility in oxygen requirements may contribute to its survival in fluctuating environmental conditions, such as those found in soil or water. Overall, the metabolic capabilities and physiological traits of Methylorubrum extorquens AM1 str. DM4 highlight its potential role in biogeochemical cycles, particularly in the conversion of methanol into biomass and energy, which may have implications for carbon cycling in various ecosystems. The ability to utilize methylated compounds positions this strain as an important player in the microbial community, potentially influencing nutrient dynamics and contributing to ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum extorquens
StrainAM1 DM4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Methylorubrum extorquens AM1 str. DM4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNot Available

Genome Summary

Methylorubrum extorquens AM1 str. DM4


Gene Summary

Adenine Count

951584 bp

Thymine Count

945195 bp

Guanine Count

2018616 bp

Cytosine Count

2028373 bp

Genome Length

5943768 bp

Protein-coding Genes

5551 genes

Non-Coding Genes

90 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
LysozymeMETD_RS09020Not Available-1958371 - 195893420406.4
hypothetical proteinMETD_RS31440Not Available-1959054 - 195944913384.9
Hypothetical proteinMETD_RS31445Not Available-1959437 - 196013524445.9
Tail proteinMETD_RS09035Not Available-1960160 - 1964062137421.0
Gta-like proteinMETD_RS09040Not Available-1964086 - 196455016527.8
Minor tail proteinMETD_RS09045Not Available-1964558 - 196545131310.0
Tail proteinMETD_RS09050Not Available-1965462 - 196610323106.4
Putative tail length tape measure protein precursorMETD_RS09055Not Available-1966115 - 196674121052.2
phage tail assembly chaperoneMETD_RS09060Not Available-1966741 - 19669718045.67
gene transfer agent family proteinMETD_RS09065Not Available-1966968 - 196729410788.0

Displaying genes 1 – 10 of 5641 in total

Metabolites

1719 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 1719 metabolites