Methylorubrum extorquens AM1 str. DM4

Gram-negativeRodMotileFacultative aerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylorubrum

Description

Methylorubrum extorquens AM1 str. DM4 is a Gram-negative, rod-shaped bacterium capable of methylotrophic metabolism, utilizing methanol and other one-carbon compounds as its primary energy sources. This organism can be found in diverse habitats, reflecting its adaptability and ecological versatility. Typically, M. extorquens AM1 str. DM4 exists in cell arrangements that include single cells and pairs, facilitating various forms of growth and interaction within its environment. The optimal growth temperature for this strain is approximately 25.0°C, indicating a preference for moderate temperature conditions. As a facultative aerobe, M. extorquens AM1 str. DM4 can thrive in both aerobic and anaerobic environments, allowing it to exploit a wide range of ecological niches. This flexibility in oxygen requirements may contribute to its survival in fluctuating environmental conditions, such as those found in soil or water. Overall, the metabolic capabilities and physiological traits of Methylorubrum extorquens AM1 str. DM4 highlight its potential role in biogeochemical cycles, particularly in the conversion of methanol into biomass and energy, which may have implications for carbon cycling in various ecosystems. The ability to utilize methylated compounds positions this strain as an important player in the microbial community, potentially influencing nutrient dynamics and contributing to ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum extorquens
StrainAM1 DM4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Methylorubrum extorquens AM1 str. DM4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Medicago truncatula
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNot Available

Genome Summary

Methylorubrum extorquens DM4, complete sequence.

Gene Summary

Adenine Count

951584 bp

Thymine Count

945195 bp

Guanine Count

2018616 bp

Cytosine Count

2028373 bp

Genome Length

5943768 bp

Protein-coding Genes

5551 genes

Non-Coding Genes

90 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
biotin/lipoyl-containing proteinMETD_RS20535Not AvailableNegative4422222 - 44224618207.94
ion channelMETD_RS20540Not AvailablePositive4422656 - 442317418682.0
hypothetical proteinMETD_RS20545Not AvailablePositive4423258 - 44234737877.39
hypothetical proteinMETD_RS20550Not AvailablePositive4423484 - 44237419410.94
nramp family divalent metal transporterMETD_RS20555Not AvailablePositive4423738 - 442506946614.0
response regulatorMETD_RS20560Not AvailablePositive4425135 - 442558715722.9
bon domain-containing proteinMETD_RS20565Not AvailablePositive4425637 - 442628423453.0
universal stress proteinMETD_RS20570Not AvailablePositive4426370 - 442717928590.2
hypothetical proteinMETD_RS31895Not AvailablePositive4427180 - 44274559571.45
hypothetical proteinMETD_RS20580Not AvailableNegative4427521 - 442838230877.3

Displaying genes 4251 – 4260 of 5641 in total

Metabolites

1719 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 1719 metabolites

Health Effects

No health effects information available for this bacterium.