Pseudomonas syringae pv. solidagae

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. solidagae is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe is heterotrophic, deriving its energy from organic compounds, which enables it to thrive in a variety of habitats, including those where organic matter is present. As an aerobic organism, P. syringae pv. solidagae requires oxygen for its metabolic processes, positioning it within ecosystems that provide adequate levels of this gas. The versatility of P. syringae pv. solidagae's habitat suggests a potential role in the decomposition of organic materials, contributing to nutrient cycling in its environments. This ecological adaptability may also facilitate interactions with other microorganisms and plants, influencing community dynamics and overall ecosystem health. Understanding its metabolic capabilities and ecological functions could provide insights into its role in various biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. solidagae

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. solidagae
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. solidagae strain ICMP16925

Gene Summary

Adenine Count

1221087 bp

Thymine Count

1216441 bp

Guanine Count

1759758 bp

Cytosine Count

1772111 bp

Genome Length

5980445 bp

Protein-coding Genes

5226 genes

Non-Coding Genes

93 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
had-superfamily hydrolaseALO46_03595Q8RYE9Negative1525285 - 152587521566.0
acyl-coa thioesterase iiALO46_100020P0AGG3Negative1525872 - 152674132732.6
histone deacetylase family proteinALO46_05258Q9HX72Negative1526882 - 152747522280.8
histone deacetylase superfamilyALO46_03597P28606Positive1527572 - 152848934059.6
family flavoproteinALO46_03598Not AvailablePositive1528596 - 152983443777.2
atp-dependent rna helicase rhleALO46_03599Not AvailableNegative1530031 - 153135948661.4
uncharacterized proteinALO46_03600P0AA72Negative1531421 - 153233531854.9
asnc family transcriptional regulatorALO46_03601Not AvailablePositive1532504 - 153297117128.9
dna polymerase iii, epsilon subunitALO46_03602P54394Negative1532996 - 153357421172.7
uncharacterized proteinALO46_03604Q89AS2Negative1534351 - 153506124533.0

Displaying genes 1421 – 1430 of 10599 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

331 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 331 metabolites

Health Effects

No health effects information available for this bacterium.