Pseudomonas syringae pv. rhaphiolepidis

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. rhaphiolepidis is a Gram-negative, rod-shaped bacterium that typically exists as single cells. As a heterotrophic organism, it derives its energy from organic compounds, which allows it to thrive in a variety of habitats. This bacterium is classified as an aerobe, indicating its requirement for oxygen to support its metabolic processes. The versatility in its energy sourcing and adaptability to multiple environments suggest that Pseudomonas syringae pv. rhaphiolepidis may play significant roles in various ecological contexts, potentially influencing nutrient cycling and interactions within microbial communities. Its ability to survive in diverse habitats further underscores the ecological resilience characteristic of the Pseudomonas genus, which is known for its metabolic diversity. This adaptability may also facilitate its survival in fluctuating environmental conditions, contributing to its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. rhaphiolepidis

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. rhaphiolepidis
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. rhaphiolepidis strain ICMP9756

Gene Summary

Adenine Count

1148015 bp

Thymine Count

1137395 bp

Guanine Count

1590773 bp

Cytosine Count

1601768 bp

Genome Length

5483023 bp

Protein-coding Genes

5129 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
site-specific recombinase dna invertase pin-like proteinALO48_02853P77698Negative855617 - 85712259000.2
ggdef domain/eal domain-containing proteinALO48_03303Not AvailablePositive857227 - 85951884774.6
uncharacterized proteinALO48_03304Not AvailableNegative859633 - 85993811064.2
high-affinity branched-chain amino acid abc transporter, periplasmic amino acid-binding proteinALO48_03305P21175Positive860185 - 86139042389.5
high-affinity branched-chain amino acid abc transporter, permease proteinALO48_03306Not AvailablePositive861618 - 86254132186.5
high-affinity branched-chain amino acid abc transporter, permease proteinALO48_100088P21628Positive862538 - 86380346306.4
high-affinity branched-chain amino acid abc transporter, atp-binding proteinALO48_03307P21629Positive863800 - 86456728036.2
high-affinity amino acid abc transporter, atp-binding proteinALO48_03308Not AvailablePositive864568 - 86526925715.5
putative lipoproteinALO48_03309Not AvailablePositive865454 - 86613424542.1
nad-utilizing dehydrogenaseALO48_03310Q05627Positive866231 - 86784458354.1

Displaying genes 811 – 820 of 5182 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

308 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 308 metabolites

Health Effects

No health effects information available for this bacterium.