Idiomarina ramblicola str. R22

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Idiomarina

Description

Idiomarina ramblicola strain R22 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 32.0°C. This species is characterized by its non-spore-forming nature, which indicates a reliance on favorable environmental conditions for survival and reproduction rather than the ability to withstand extreme stress through sporulation. The Gram-negative cell wall structure of Idiomarina ramblicola str. R22 suggests a complex outer membrane that may confer a variety of adaptive advantages, such as resistance to certain antibiotics and the capacity for selective transport of nutrients. Its rod shape is a common morphological trait among many bacteria, facilitating motility and nutrient uptake in diverse aquatic environments. The specific growth temperature of 32.0°C aligns with the organism's potential habitat in moderately warm aquatic systems, which may influence its metabolic pathways and ecological interactions. The aerobic requirement indicates that this bacterium utilizes oxygen for its metabolic processes, potentially impacting the local biogeochemical cycles, particularly in marine environments where oxygen availability varies. Overall, Idiomarina ramblicola str. R22 exemplifies the adaptations of certain marine bacteria to specific thermal and oxygen conditions, highlighting the intricate relationships between microbial life and their environmental niches in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusIdiomarina
SpeciesIdiomarina ramblicola
StrainR22

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Idiomarina ramblicola str. R22
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatRambla Salada
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Idiomarina ramblicola strain R22 contig15, whole genome shotgun

Gene Summary

Adenine Count

720849 bp

Thymine Count

718670 bp

Guanine Count

620650 bp

Cytosine Count

652191 bp

Genome Length

2712360 bp

Protein-coding Genes

2512 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
utp--glucose-1-phosphate uridylyltransferaseCWI78_10130Not AvailablePositive2127406 - 212829032026.9
lysr family transcriptional regulatorCWI78_10135Not AvailableNegative2128296 - 212918933326.8
trna 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase cmobCWI78_10140Not AvailableNegative2129211 - 213018236797.1
carboxy-s-adenosyl-l-methionine synthase cmoaCWI78_10145Not AvailableNegative2130191 - 213092227433.0
hypothetical proteinCWI78_10150Not AvailablePositive2131040 - 213247053008.6
aspartate--trna ligaseCWI78_10155Not AvailablePositive2132545 - 213431466031.1
yebc/pmpr family dna-binding transcriptional regulatorCWI78_10160Not AvailablePositive2134331 - 213508027136.4
crossover junction endodeoxyribonuclease ruvcCWI78_10165Not AvailablePositive2135081 - 213561719064.3
holliday junction branch migration protein ruvaCWI78_10170Not AvailablePositive2135630 - 213624722665.5
holliday junction branch migration dna helicase ruvbCWI78_10175Not AvailablePositive2136257 - 213727637535.2

Displaying genes 2021 – 2030 of 2565 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.