Idiomarina ramblicola str. R22

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Idiomarinaceae

Genus

Idiomarina

Description

Idiomarina ramblicola strain R22 is a Gram-negative, rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 32.0°C. This species is characterized by its non-spore-forming nature, which indicates a reliance on favorable environmental conditions for survival and reproduction rather than the ability to withstand extreme stress through sporulation. The Gram-negative cell wall structure of Idiomarina ramblicola str. R22 suggests a complex outer membrane that may confer a variety of adaptive advantages, such as resistance to certain antibiotics and the capacity for selective transport of nutrients. Its rod shape is a common morphological trait among many bacteria, facilitating motility and nutrient uptake in diverse aquatic environments. The specific growth temperature of 32.0°C aligns with the organism's potential habitat in moderately warm aquatic systems, which may influence its metabolic pathways and ecological interactions. The aerobic requirement indicates that this bacterium utilizes oxygen for its metabolic processes, potentially impacting the local biogeochemical cycles, particularly in marine environments where oxygen availability varies. Overall, Idiomarina ramblicola str. R22 exemplifies the adaptations of certain marine bacteria to specific thermal and oxygen conditions, highlighting the intricate relationships between microbial life and their environmental niches in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyIdiomarinaceae
GenusIdiomarina
SpeciesIdiomarina ramblicola
StrainR22

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Idiomarina ramblicola str. R22
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature32
Temperature rangemesophilic
HabitatRambla Salada
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Idiomarina ramblicola strain R22 contig15, whole genome shotgun

Gene Summary

Adenine Count

720849 bp

Thymine Count

718670 bp

Guanine Count

620650 bp

Cytosine Count

652191 bp

Genome Length

2712360 bp

Protein-coding Genes

2512 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydrolipoyl dehydrogenaseCWI78_04955Not AvailableNegative1075893 - 107732050996.4
dihydrolipoyllysine-residue acetyltransferaseCWI78_04960Not AvailableNegative1077432 - 107918363002.2
pyruvate dehydrogenase (acetyl-transferring), homodimeric typeCWI78_04965Not AvailableNegative1079196 - 1081868100318.0
pyruvate dehydrogenase complex transcriptional repressor pdhrCWI78_04970Not AvailableNegative1081894 - 108264027865.4
regulatory signaling modulator protein ampeCWI78_04975Not AvailableNegative1082726 - 108355632022.9
1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampdCWI78_04980Not AvailableNegative1083567 - 108411520793.4
nicotinate-nucleotide diphosphorylase (carboxylating)CWI78_04985Not AvailablePositive1084183 - 108505531724.7
pilus assembly protein pilaCWI78_04990Not AvailablePositive1085142 - 108562417421.9
type ii secretion protein atpaseCWI78_04995Not AvailablePositive1085624 - 108692548049.5
type ii secretion system f family proteinCWI78_05000Not AvailablePositive1086912 - 108808743977.1

Displaying genes 991 – 1000 of 2565 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.