Pseudomonas syringae pv. viburni

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae group genomosp. 3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas syringae pv. viburni
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. viburni strain ICMP3963

Gene Summary

Adenine Count

1319456 bp

Thymine Count

1327986 bp

Guanine Count

1883926 bp

Cytosine Count

1873313 bp

Genome Length

6405504 bp

Protein-coding Genes

5702 genes

Non-Coding Genes

126 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochromeALO40_05177Not AvailableNegative618069 - 61881828020.5
endonuclease/exonuclease/phosphataseALO40_02016P0AAW3Positive618828 - 61961329367.2
putative membrane proteinALO40_100158P75770Positive620857 - 62185536951.1
transcriptional regulator, rpir familyALO40_02017Not AvailableNegative621909 - 62281733807.3
iolc proteinALO40_02018Q5KYR3Positive623089 - 62502671443.6
iole proteinALO40_02019P49304Positive625097 - 62600233120.4
iolb proteinALO40_02020Q5KYR2Positive626032 - 62684129754.9
methylmalonate-semialdehyde dehydrogenaseALO40_02021Not AvailablePositive626862 - 62837054009.1
inosose isomeraseALO40_101700Not AvailablePositive628709 - 62923618974.6
iold proteinALO40_02022Q5KYR0Positive629300 - 63123770299.9

Displaying genes 621 – 630 of 5828 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

323 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 323 metabolites

Health Effects

No health effects information available for this bacterium.