Nocardia farcinica IFM 10152

Gram-positiveRodMotileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Gram-positive, filamentous-growing soil saprophyte. It can cause the disease nocardiosis in humans: an acute, subacute, or chronic infectious disease occurring in cutaneous and pulmonary tissues, and also in the central nervous system.(From http://www.expasy.org/sprot/hamap/NOCFA.html) (BacMap)

Taxonomy

Kingdom	Bacillati
Phylum	Actinomycetota
Class	Actinomycetes
Order	Mycobacteriales
Family	Nocardiaceae
Genus	Nocardia
Species	Nocardia farcinica
Strain	IFM 10152

Profile

Physiology
Gram staining properties	Positive
Shape	Rod
Mobility	Yes
Flagellar presence	Yes
Number of membranes	1

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobe
Optimal temperature	37
Temperature range	Mesophilic
Habitat	Multiple
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Filaments
Sporulation	Sporulating
Energy source	Chemoheterotroph
Pathogenicity	Yes

Genome Summary

Nocardia farcinica IFM 10152, complete sequence.

NC_006361.1 NC_006362.1 NC_006363.1

Gene Summary

Adenine Count

878196 bp

Thymine Count

877989 bp

Guanine Count

2135311 bp

Cytosine Count

2129729 bp

Genome Length

6021225 bp

Protein-coding Genes

5600 genes

Non-Coding Genes

195 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
atp-dependent clp protease atp-binding subunit	NFA_RS02105	Not Available	Positive	433460 - 436015	94167.7
helix-turn-helix domain-containing protein	NFA_RS02110	Not Available	Negative	436086 - 436397	11487.7
type ii toxin-antitoxin system rele/pare family toxin	NFA_RS32440	Not Available	Negative	436394 - 436606	8077.65
response regulator transcription factor	NFA_RS02120	Not Available	Negative	436832 - 437494	23615.7
sensor histidine kinase	NFA_RS02125	Not Available	Negative	437491 - 438696	42015.0
abc transporter atp-binding protein	NFA_RS02130	Not Available	Positive	438808 - 439707	31238.8
abc transporter permease	NFA_RS02135	Not Available	Positive	439704 - 440552	29326.4
sensor histidine kinase	NFA_RS02140	Not Available	Negative	440640 - 442139	52134.8
srpbcc family protein	NFA_RS02145	Not Available	Positive	442210 - 442668	17356.7
osmc family peroxiredoxin	NFA_RS02150	Not Available	Positive	442758 - 443198	14482.8

Displaying genes 571 – 580 of 6067 in total

Pathways

753 pathways

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lysine Biosynthesis

Taurine Metabolism

TCA Cycle

Glycolysis and Pyruvate Dehydrogenase

Arginine Metabolism

Ornithine Metabolism

Show All 753 Pathways

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P	Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000251	2-dehydropantoateC6H9O4	Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000377	(S)-malateC4H4O5	Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000716	4-methylsulfanyl-2-oxobutanoateC5H7O3S	Not available	Average147.17Da Monoisotopic147.012138839Da
BASm0000989	GlycerolC3H8O3	`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001369	peroxynitriteNO3	`19059-14-4`	Average62.0049Da Monoisotopic61.987817871Da
BASm0001717	fumarateC4H2O4	Not available	Average114.0563Da Monoisotopic113.9953086Da
BASm0001772	maleateC4H2O4	Not available	Average114.057Da Monoisotopic113.996405704Da
BASm0001865	diphosphateHO7P2	Not available	Average174.95Da Monoisotopic174.9213971Da

Displaying 1–10 of 92 metabolites

Health Effects

No health effects information available for this bacterium.