Vibrio cholerae O1 biovar El Tor str. N16961

Gram-negativeCurvedShapedMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio cholerae O1 biovar ElTor str. N16961.This is an epidemic serogroup of Vibrio cholerae isolated in 1971 in Bangladesh and is distinguished from the classical biotype due to hemolysin production. It contains 2 chromosomes. The first, and larger chromosome, contains many essential cell functions, as well as virulence genes contained within pathogenicity islands (PAIs). One major pathogenicity determinant is encoded within a PAI that is contained inside an integrated phage (CTXphi) on chromosome 1 that codes for the cholera toxin, an adenylate cyclase. Once the toxin is injected into host cells, it results in secretion of chlorine ions, which leads to increased water secretion, dehydration, and eventually, death. Up to 20 litres of water a day may be lost. The second chromosome also has important cell functions, but has a preponderance of genes associated with energy and transport functions, including signal transduction systems, and in addition, DNA repair enzymes. Chromosome 2 also has the integron island, a large variable region of the chromosome that functions as a gene capture system, some of which are associated with antibiotic resistance. There are 105 genes that have copies on both chromosomes. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio cholerae
StrainN16961

Profile

Physiology
Gram staining propertiesNegative
ShapeCurvedShaped
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Vibrio cholerae O1 biovar El Tor str. N16961
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityYes

Genome Summary

Vibrio cholerae O1 biovar El Tor str. N16961 chromosome I,

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2560 genes

Non-Coding Genes

137 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysm peptidoglycan-binding domain-containing proteinVC_RS00215Not AvailablePositive44948 - 4607541530.4
dna-processing protein dpraVC_RS00220Not AvailablePositive46075 - 4719040037.3
duf494 family proteinVC_RS00225Not AvailablePositive47193 - 4766918469.2
type i dna topoisomeraseVC_RS00230Not AvailablePositive47685 - 4825120881.2
5-(carboxyamino)imidazole ribonucleotide synthaseVC_RS00235Not AvailableNegative48324 - 4945741016.5
5-(carboxyamino)imidazole ribonucleotide mutaseVC_RS00240Not AvailableNegative49461 - 4994616646.2
l-threonylcarbamoyladenylate synthaseVC_RS00245Not AvailablePositive50113 - 5067019965.1
oxygen-dependent coproporphyrinogen oxidaseVC_RS00250Not AvailablePositive50689 - 5160635127.5
shikimate dehydrogenaseVC_RS00255Not AvailablePositive51668 - 5250430251.3
duf1488 domain-containing proteinVC_RS00260Not AvailablePositive52501 - 5277610516.4

Displaying genes 61 – 70 of 3711 in total

Metabolites

324 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 324 metabolites

Health Effects

No health effects information available for this bacterium.