Vibrio cholerae O1 biovar El Tor str. N16961

Gram-negativeCurvedShapedMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio cholerae O1 biovar ElTor str. N16961.This is an epidemic serogroup of Vibrio cholerae isolated in 1971 in Bangladesh and is distinguished from the classical biotype due to hemolysin production. It contains 2 chromosomes. The first, and larger chromosome, contains many essential cell functions, as well as virulence genes contained within pathogenicity islands (PAIs). One major pathogenicity determinant is encoded within a PAI that is contained inside an integrated phage (CTXphi) on chromosome 1 that codes for the cholera toxin, an adenylate cyclase. Once the toxin is injected into host cells, it results in secretion of chlorine ions, which leads to increased water secretion, dehydration, and eventually, death. Up to 20 litres of water a day may be lost. The second chromosome also has important cell functions, but has a preponderance of genes associated with energy and transport functions, including signal transduction systems, and in addition, DNA repair enzymes. Chromosome 2 also has the integron island, a large variable region of the chromosome that functions as a gene capture system, some of which are associated with antibiotic resistance. There are 105 genes that have copies on both chromosomes. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio cholerae
StrainN16961

Profile

Physiology
Gram staining propertiesNegative
ShapeCurvedShaped
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Vibrio cholerae O1 biovar El Tor str. N16961
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityYes

Genome Summary

Vibrio cholerae O1 biovar El Tor str. N16961 chromosome I,

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2560 genes

Non-Coding Genes

137 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
n-acetylneuraminate epimeraseVC_RS08565Not AvailableNegative1923895 - 192504941946.5
murr/rpir family transcriptional regulatorVC_RS08570Not AvailableNegative1925231 - 192606729827.9
dihydrodipicolinate synthase family proteinVC_RS08575Not AvailableNegative1926196 - 192709232222.9
sialic acid trap transporter large permease siamVC_RS08580Not AvailableNegative1927130 - 192841345459.6
sialic acid trap transporter small permease siaqVC_RS08585Not AvailableNegative1928421 - 192894219503.5
sialic acid trap transporter solute-binding subunit siapVC_RS08590Not AvailableNegative1928993 - 192995835984.2
putative n-acetylmannosamine-6-phosphate 2-epimeraseVC_RS08595Not AvailablePositive1930173 - 193089525503.4
n-acetylmannosamine kinaseVC_RS08600Not AvailablePositive1930883 - 193174630519.9
n-acetylglucosamine-6-phosphate deacetylaseVC_RS08605Not AvailablePositive1931750 - 193288641102.9
sialidase family proteinVC_RS08610Not AvailablePositive1933309 - 193565485614.0

Displaying genes 1721 – 1730 of 3711 in total

Metabolites

219 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 219 metabolites

Health Effects

No health effects information available for this bacterium.