Kingdom
Bacillati
Phylum
Cyanobacteriota
Class
Cyanophyceae
Order
Nostocales
Family
Nostocaceae
Genus
Trichormus
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Cyanobacteriota |
| Class | Cyanophyceae |
| Order | Nostocales |
| Family | Nostocaceae |
| Genus | Trichormus |
| Species | Trichormus variabilis |
| Strain | ATCC 29413 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Filamentous |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Filaments - Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Trichormus variabilis ATCC 29413 plasmid B, complete sequence.
Gene Summary
Adenine Count
10782 bp
Thymine Count
11212 bp
Guanine Count
6936 bp
Cytosine Count
6832 bp
Genome Length
35762 bp
Protein-coding Genes
33 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hormogonium polysaccharide biosynthesis protein hpsa | AVA_RS01315 | Not Available | Positive | 337530 - 342569 | 182756.0 |
| hormogonium polysaccharide secretion pseudopilin hpsb | AVA_RS01320 | Not Available | Positive | 342733 - 343419 | 23913.6 |
| hormogonium polysaccharide secretion pseudopilin hpsc | AVA_RS01325 | Not Available | Positive | 343463 - 344443 | 35202.8 |
| type iv pilin protein | AVA_RS01330 | Not Available | Positive | 344482 - 345159 | 24575.8 |
| hormogonium polysaccharide biosynthesis glycosyltransferase hpse | AVA_RS01335 | Not Available | Positive | 345546 - 346517 | 37244.7 |
| hormogonium polysaccharide biosynthesis glycosyltransferase hpse | AVA_RS01340 | Not Available | Positive | 346535 - 347542 | 38970.0 |
| glycosyltransferase family 2 protein | AVA_RS01345 | Not Available | Positive | 347535 - 348536 | 37916.8 |
| type ii secretion system protein | AVA_RS01350 | Not Available | Positive | 348559 - 349116 | 21112.3 |
| tigr04282 family arsenosugar biosynthesis glycosyltransferase | AVA_RS01355 | Not Available | Positive | 349149 - 349799 | 24427.6 |
| hpsj family protein | AVA_RS01360 | Not Available | Positive | 350049 - 350891 | 31043.8 |
Pathways
1332 pathways
Health Effects
No health effects information available for this bacterium.
