Pseudomonas putida ND6

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida ND6 is a Gram-negative, rod-shaped bacterium that typically exists in soil and wastewater environments. This microbe is characterized by its arrangement in single cells, which allows for a versatile adaptive response to varying environmental conditions. As a heterotroph, Pseudomonas putida ND6 derives its energy from organic compounds, enabling it to thrive in nutrient-rich substrates often found in polluted or organic waste environments. The facultative anaerobic nature of Pseudomonas putida ND6 allows it to grow in both aerobic and anaerobic conditions, providing a significant advantage in dynamic habitats where oxygen levels may fluctuate. This adaptability is crucial for survival and metabolic versatility, especially in contaminated sites where it can contribute to the biodegradation of various organic pollutants. With its robust metabolic capabilities, Pseudomonas putida ND6 holds potential for bioremediation applications, where its ability to break down environmental contaminants can be harnessed for ecological restoration. The presence of this bacterium in soil and wastewater highlights its role in nutrient cycling and the maintenance of ecosystem health, particularly in environments impacted by human activities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainND6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida ND6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida ND6, complete sequence.

Gene Summary

Adenine Count

1162367 bp

Thymine Count

1163941 bp

Guanine Count

1883607 bp

Cytosine Count

1875534 bp

Genome Length

6085449 bp

Protein-coding Genes

5348 genes

Non-Coding Genes

232 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ivb secretion system protein icmh/dotuYSA_RS01385Not AvailablePositive183735 - 18460432602.8
hcp family type vi secretion system effectorYSA_RS01390Not AvailablePositive184737 - 18525218975.1
type vi secretion system vgr family proteinYSA_RS01395Not AvailablePositive185326 - 18749482215.3
duf4123 domain-containing proteinYSA_RS01400Not AvailablePositive187491 - 18841434433.2
t6ss effector bth_i2691 family proteinYSA_RS01405Not AvailablePositive188407 - 191395110024.0
duf6708 domain-containing proteinYSA_RS01410Not AvailablePositive191398 - 19229134156.1
paar domain-containing proteinYSA_RS01415Not AvailablePositive192288 - 1925458695.29
iclr family transcriptional regulatorYSA_RS01420Not AvailableNegative192696 - 19346628750.9
shikimate dehydrogenase family proteinYSA_RS01425Not AvailablePositive193623 - 19443228176.9
fad-dependent oxidoreductaseYSA_RS01430Not AvailablePositive194437 - 19617062024.1

Displaying genes 351 – 360 of 5820 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.