Pseudomonas putida ND6

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida ND6 is a Gram-negative, rod-shaped bacterium that typically exists in soil and wastewater environments. This microbe is characterized by its arrangement in single cells, which allows for a versatile adaptive response to varying environmental conditions. As a heterotroph, Pseudomonas putida ND6 derives its energy from organic compounds, enabling it to thrive in nutrient-rich substrates often found in polluted or organic waste environments. The facultative anaerobic nature of Pseudomonas putida ND6 allows it to grow in both aerobic and anaerobic conditions, providing a significant advantage in dynamic habitats where oxygen levels may fluctuate. This adaptability is crucial for survival and metabolic versatility, especially in contaminated sites where it can contribute to the biodegradation of various organic pollutants. With its robust metabolic capabilities, Pseudomonas putida ND6 holds potential for bioremediation applications, where its ability to break down environmental contaminants can be harnessed for ecological restoration. The presence of this bacterium in soil and wastewater highlights its role in nutrient cycling and the maintenance of ecosystem health, particularly in environments impacted by human activities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainND6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida ND6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida ND6, complete sequence.

Gene Summary

Adenine Count

1162367 bp

Thymine Count

1163941 bp

Guanine Count

1883607 bp

Cytosine Count

1875534 bp

Genome Length

6085449 bp

Protein-coding Genes

5348 genes

Non-Coding Genes

232 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-70 family rna polymerase sigma factorYSA_RS00985Not AvailableNegative87210 - 8772219523.6
phosphoglucomutase (alpha-d-glucose-1,6-bisphosphate-dependent)YSA_RS00990Not AvailableNegative87801 - 8943858606.4
duf1345 domain-containing proteinYSA_RS00995Not AvailablePositive89612 - 9025923219.3
duf1652 domain-containing proteinYSA_RS01000Not AvailablePositive90534 - 907949428.54
putative bifunctional diguanylate cyclase/phosphodiesteraseYSA_RS01005Not AvailableNegative90846 - 9293374803.1
efflux transporter outer membrane subunitYSA_RS01010Not AvailableNegative93064 - 9455453927.3
efflux rnd transporter permease subunitYSA_RS01015Not AvailableNegative94551 - 97658112295.0
mdtb/muxb family multidrug efflux rnd transporter permease subunitYSA_RS01020Not AvailableNegative97655 - 100753111453.0
mdta/muxa family multidrug efflux rnd transporter periplasmic adaptor subunitYSA_RS01025Not AvailableNegative100750 - 10205746620.6
thiol peroxidaseYSA_RS01030Not AvailableNegative102405 - 10290517395.7

Displaying genes 271 – 280 of 5820 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.