Pseudomonas putida ND6

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida ND6 is a Gram-negative, rod-shaped bacterium that typically exists in soil and wastewater environments. This microbe is characterized by its arrangement in single cells, which allows for a versatile adaptive response to varying environmental conditions. As a heterotroph, Pseudomonas putida ND6 derives its energy from organic compounds, enabling it to thrive in nutrient-rich substrates often found in polluted or organic waste environments. The facultative anaerobic nature of Pseudomonas putida ND6 allows it to grow in both aerobic and anaerobic conditions, providing a significant advantage in dynamic habitats where oxygen levels may fluctuate. This adaptability is crucial for survival and metabolic versatility, especially in contaminated sites where it can contribute to the biodegradation of various organic pollutants. With its robust metabolic capabilities, Pseudomonas putida ND6 holds potential for bioremediation applications, where its ability to break down environmental contaminants can be harnessed for ecological restoration. The presence of this bacterium in soil and wastewater highlights its role in nutrient cycling and the maintenance of ecosystem health, particularly in environments impacted by human activities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainND6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida ND6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida ND6, complete sequence.

Gene Summary

Adenine Count

1162367 bp

Thymine Count

1163941 bp

Guanine Count

1883607 bp

Cytosine Count

1875534 bp

Genome Length

6085449 bp

Protein-coding Genes

5348 genes

Non-Coding Genes

232 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rdgb/ham1 family non-canonical purine ntp pyrophosphataseYSA_RS11430Not AvailablePositive2348604 - 234920021318.5
radical sam family heme chaperone hemwYSA_RS11435Not AvailablePositive2349197 - 235037243465.8
duf3392 domain-containing proteinYSA_RS11440Not AvailablePositive2350382 - 235070811498.5
trna (guanosine(46)-n7)-methyltransferase trmbYSA_RS11445Not AvailableNegative2350917 - 235163927194.6
thiazole synthaseYSA_RS11450Not AvailableNegative2351649 - 235246128919.4
sulfur carrier protein thisYSA_RS11455Not AvailableNegative2352516 - 23527167075.48
duf423 domain-containing proteinYSA_RS11460Not AvailableNegative2352819 - 235319012836.3
t6ss effector bth_i2691 family proteinYSA_RS11465Not AvailablePositive2353220 - 235396525657.5
rna polymerase sigma factor rpohYSA_RS11470Not AvailableNegative2354214 - 235506832504.6
permease-like cell division protein ftsxYSA_RS11475Not AvailableNegative2355180 - 235620536970.2

Displaying genes 2301 – 2310 of 5820 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.