Pseudomonas putida ND6

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida ND6 is a Gram-negative, rod-shaped bacterium that typically exists in soil and wastewater environments. This microbe is characterized by its arrangement in single cells, which allows for a versatile adaptive response to varying environmental conditions. As a heterotroph, Pseudomonas putida ND6 derives its energy from organic compounds, enabling it to thrive in nutrient-rich substrates often found in polluted or organic waste environments. The facultative anaerobic nature of Pseudomonas putida ND6 allows it to grow in both aerobic and anaerobic conditions, providing a significant advantage in dynamic habitats where oxygen levels may fluctuate. This adaptability is crucial for survival and metabolic versatility, especially in contaminated sites where it can contribute to the biodegradation of various organic pollutants. With its robust metabolic capabilities, Pseudomonas putida ND6 holds potential for bioremediation applications, where its ability to break down environmental contaminants can be harnessed for ecological restoration. The presence of this bacterium in soil and wastewater highlights its role in nutrient cycling and the maintenance of ecosystem health, particularly in environments impacted by human activities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainND6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida ND6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida ND6, complete sequence.

Gene Summary

Adenine Count

1162367 bp

Thymine Count

1163941 bp

Guanine Count

1883607 bp

Cytosine Count

1875534 bp

Genome Length

6085449 bp

Protein-coding Genes

5348 genes

Non-Coding Genes

232 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal phosphate-dependent aminotransferaseYSA_RS09005Not AvailableNegative1806072 - 180724442480.7
rna polymerase-binding protein dksaYSA_RS09010Not AvailablePositive1807455 - 180790117132.4
trna glutamyl-q(34) synthetase gluqrsYSA_RS09015Not AvailablePositive1807965 - 180885233307.8
hypothetical proteinYSA_RS09020Not AvailablePositive1809097 - 18092736991.78
sensor histidine kinaseYSA_RS09025Not AvailablePositive1809257 - 1812232109235.0
sigma-54-dependent transcriptional regulatorYSA_RS09030Not AvailablePositive1812237 - 181367952612.6
polynucleotide adenylyltransferase pcnbYSA_RS09035Not AvailablePositive1814459 - 181584152710.1
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseYSA_RS09040Not AvailablePositive1815838 - 181631717482.1
3-methyl-2-oxobutanoate hydroxymethyltransferaseYSA_RS09045Not AvailablePositive1816580 - 181738027763.8
pantoate--beta-alanine ligaseYSA_RS09050Not AvailablePositive1817377 - 181824031181.6

Displaying genes 1831 – 1840 of 5820 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.