Bacteroides thetaiotaomicron VPI-5482

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides thetaiotaomicron VPI-5482 is an obligate anaerobe, a chemoheterotroph that generates energy through fermentation, is Gram-negative, rod-shaped, and commonly inhabits the human colon as well as other body sites such as the oral cavity and gastrointestinal tract. This microbe is a member of the Bacteroidetes phylum, which is characterized by its significant role in the human gut microbiome. As an obligate anaerobe, Bacteroides thetaiotaomicron thrives in environments devoid of oxygen, making it well-suited for the anaerobic conditions of the intestine. Its classification as a chemoheterotroph means that it derives energy from organic compounds, specifically polysaccharides, which it breaks down through fermentation. This metabolic activity not only provides energy for the organism but also contributes to the fermentation of dietary fibers, producing short-chain fatty acids that are beneficial to human health. The Gram-negative nature of Bacteroides thetaiotaomicron indicates that it has a thin peptidoglycan layer surrounded by an outer membrane, which can provide a protective barrier against certain antibiotics and host immune responses. Its rod-shaped morphology allows it to efficiently colonize the intestinal mucosa, where it plays a crucial role in maintaining gut homeostasis and supporting the immune system. Bacteroides thetaiotaomicron is also known for its ability to degrade complex carbohydrates, which promotes a healthy gut environment and aids in nutrient absorption. Furthermore, it has been studied for its potential therapeutic applications, including its role in modulating inflammatory responses and its interactions with various pharmaceuticals, underscoring its significance in both human health and disease management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides thetaiotaomicron
StrainVPI-5482

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides thetaiotaomicron VPI-5482
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Bacteroides thetaiotaomicron VPI-5482, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4761 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tigr03905 family tscpd domain-containing proteinBT_RS03100Not AvailablePositive775012 - 7752578964.82
nramp family divalent metal transporterBT_RS03105Not AvailablePositive775422 - 77667545491.8
exodeoxyribonuclease iiiBT_RS03110Not AvailablePositive776706 - 77746729217.6
c-gcaxxg-c-c family proteinBT_RS03115Not AvailablePositive777482 - 77794016730.1
winged helix-turn-helix domain-containing proteinBT_RS03120Not AvailablePositive778097 - 7782977359.09
translation elongation factor 4BT_RS03125Not AvailablePositive778426 - 78020766627.8
hypothetical proteinBT_RS03130Not AvailablePositive780349 - 78152744488.1
na+/h+ antiporter nhaaBT_RS03135Not AvailablePositive781573 - 78289247175.3
blai/meci/copy family transcriptional regulatorBT_RS03140Not AvailablePositive783111 - 78347914453.2
m56 family metallopeptidaseBT_RS03145Not AvailablePositive783550 - 78519662582.5

Displaying genes 631 – 640 of 4889 in total

Metabolites

294 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000738D-lyxoseC5H10O5Chemical structure of D-lyxose1114-34-7
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 294 metabolites

Health Effects

No health effects information available for this bacterium.