Bacteroides thetaiotaomicron VPI-5482

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides thetaiotaomicron VPI-5482 is an obligate anaerobe, a chemoheterotroph that generates energy through fermentation, is Gram-negative, rod-shaped, and commonly inhabits the human colon as well as other body sites such as the oral cavity and gastrointestinal tract. This microbe is a member of the Bacteroidetes phylum, which is characterized by its significant role in the human gut microbiome. As an obligate anaerobe, Bacteroides thetaiotaomicron thrives in environments devoid of oxygen, making it well-suited for the anaerobic conditions of the intestine. Its classification as a chemoheterotroph means that it derives energy from organic compounds, specifically polysaccharides, which it breaks down through fermentation. This metabolic activity not only provides energy for the organism but also contributes to the fermentation of dietary fibers, producing short-chain fatty acids that are beneficial to human health. The Gram-negative nature of Bacteroides thetaiotaomicron indicates that it has a thin peptidoglycan layer surrounded by an outer membrane, which can provide a protective barrier against certain antibiotics and host immune responses. Its rod-shaped morphology allows it to efficiently colonize the intestinal mucosa, where it plays a crucial role in maintaining gut homeostasis and supporting the immune system. Bacteroides thetaiotaomicron is also known for its ability to degrade complex carbohydrates, which promotes a healthy gut environment and aids in nutrient absorption. Furthermore, it has been studied for its potential therapeutic applications, including its role in modulating inflammatory responses and its interactions with various pharmaceuticals, underscoring its significance in both human health and disease management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides thetaiotaomicron
StrainVPI-5482

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides thetaiotaomicron VPI-5482
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Bacteroides thetaiotaomicron VPI-5482, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4761 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ferritinBT_RS06950Not AvailableNegative1701610 - 170208917971.3
diaminopimelate decarboxylaseBT_RS06955Not AvailableNegative1702211 - 170337142576.4
aspartate kinaseBT_RS06960Not AvailableNegative1703450 - 170476949263.4
cell division atp-binding protein ftseBT_RS06965Not AvailableNegative1704783 - 170550827476.1
bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisieBT_RS06970Not AvailableNegative1705493 - 170610423079.4
imidazole glycerol phosphate synthase subunit hisfBT_RS06975Not AvailableNegative1706167 - 170692226935.1
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseBT_RS06980Not AvailableNegative1707031 - 170775026269.7
imidazole glycerol phosphate synthase subunit hishBT_RS06985Not AvailableNegative1707922 - 170851222135.5
formyltetrahydrofolate deformylaseBT_RS06990Not AvailableNegative1708512 - 170936933329.8
Trna-aspNot AvailableNot AvailablePositive1709813 - 1709886Not Available

Displaying genes 1401 – 1410 of 4889 in total

Metabolites

294 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000738D-lyxoseC5H10O5Chemical structure of D-lyxose1114-34-7
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 294 metabolites

Health Effects

No health effects information available for this bacterium.