Pseudomonas protegens Pf-5

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas protegens Pf-5 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives in aerobic environments. This heterotrophic microbe has an optimal growth temperature of 25.0°C, suggesting its adaptation to a range of moderately warm habitats. P. protegens Pf-5 is known for its metabolic versatility, allowing it to utilize various organic compounds as energy sources, which is indicative of its ecological role in diverse environments. This strain has been extensively studied for its potential applications in agriculture and biocontrol, particularly due to its capacity to produce secondary metabolites that may inhibit plant pathogens. The ability of P. protegens Pf-5 to inhabit multiple environments underscores its ecological plasticity, enabling it to thrive in soil, plant rhizospheres, and other niches where organic material is available. Its aerobic nature indicates that it plays a significant role in aerobic decomposition processes, contributing to nutrient cycling in these ecosystems. Overall, Pseudomonas protegens Pf-5 exemplifies the dynamic interactions within microbial communities, particularly in how heterotrophic bacteria can influence plant health and soil fertility through their metabolic activities and interactions with other organisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas protegens
StrainPf-5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas protegens Pf-5
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas protegens Pf-5, complete sequence.

Gene Summary

Adenine Count

1305352 bp

Thymine Count

1290785 bp

Guanine Count

2232065 bp

Cytosine Count

2246691 bp

Genome Length

7074893 bp

Protein-coding Genes

6201 genes

Non-Coding Genes

210 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lyse family translocatorPFL_RS24895Not AvailableNegative5636766 - 563740423229.0
nudix domain-containing proteinPFL_RS24900Not AvailableNegative5637430 - 563786415504.7
hd domain-containing phosphohydrolasePFL_RS24905Not AvailableNegative5637965 - 563931150412.0
type b 50s ribosomal protein l31PFL_RS24910Not AvailableNegative5639508 - 56397779747.26
apc family permeasePFL_RS24915Not AvailableNegative5639878 - 564120347488.3
carbon-nitrogen hydrolase family proteinPFL_RS24920Not AvailableNegative5641300 - 564212129797.8
luxr c-terminal-related transcriptional regulatorPFL_RS24925Not AvailablePositive5642215 - 564301530509.6
fmn-binding glutamate synthase family proteinPFL_RS24930Not AvailablePositive5643124 - 564474359037.0
putative quinol monooxygenasePFL_RS24935Not AvailablePositive5644807 - 564509111234.4
cupin domain-containing proteinPFL_RS24940Not AvailablePositive5645168 - 564546410543.8

Displaying genes 5051 – 5060 of 6411 in total

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014031Butyric acidC4H8O2Chemical structure of Butyric acid107-92-6
Average88.1051Da
Monoisotopic88.0524295Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da

Displaying 1–10 of 88 metabolites

Health Effects

No health effects information available for this bacterium.