Pseudomonas protegens Pf-5

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas protegens Pf-5 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and thrives in aerobic environments. This heterotrophic microbe has an optimal growth temperature of 25.0°C, suggesting its adaptation to a range of moderately warm habitats. P. protegens Pf-5 is known for its metabolic versatility, allowing it to utilize various organic compounds as energy sources, which is indicative of its ecological role in diverse environments. This strain has been extensively studied for its potential applications in agriculture and biocontrol, particularly due to its capacity to produce secondary metabolites that may inhibit plant pathogens. The ability of P. protegens Pf-5 to inhabit multiple environments underscores its ecological plasticity, enabling it to thrive in soil, plant rhizospheres, and other niches where organic material is available. Its aerobic nature indicates that it plays a significant role in aerobic decomposition processes, contributing to nutrient cycling in these ecosystems. Overall, Pseudomonas protegens Pf-5 exemplifies the dynamic interactions within microbial communities, particularly in how heterotrophic bacteria can influence plant health and soil fertility through their metabolic activities and interactions with other organisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas protegens
StrainPf-5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas protegens Pf-5
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas protegens Pf-5, complete sequence.

Gene Summary

Adenine Count

1305352 bp

Thymine Count

1290785 bp

Guanine Count

2232065 bp

Cytosine Count

2246691 bp

Genome Length

7074893 bp

Protein-coding Genes

6201 genes

Non-Coding Genes

210 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hlyd family secretion proteinPFL_RS20945Not AvailableNegative4789731 - 479084040097.9
efflux transporter outer membrane subunitPFL_RS20950Not AvailableNegative4790837 - 479231552109.8
duf4337 domain-containing proteinPFL_RS20955Not AvailablePositive4792552 - 479313021225.2
aldehyde dehydrogenasePFL_RS20960Not AvailablePositive4793331 - 479482153141.2
amidohydrolasePFL_RS20965Not AvailablePositive4795008 - 479692771128.1
nad(p)/fad-dependent oxidoreductasePFL_RS20970Not AvailableNegative4797065 - 479838448422.0
s8 family serine peptidasePFL_RS20975Not AvailableNegative4798369 - 479905224052.4
abc transporter atp-binding proteinPFL_RS20980Not AvailableNegative4799042 - 480076062951.2
sigma-54-dependent fis family transcriptional regulatorPFL_RS20985Not AvailableNegative4800760 - 480266468933.0
histone deacetylase family proteinPFL_RS20990Not AvailableNegative4803120 - 480414537082.7

Displaying genes 4241 – 4250 of 6411 in total

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014031Butyric acidC4H8O2Chemical structure of Butyric acid107-92-6
Average88.1051Da
Monoisotopic88.0524295Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da

Displaying 1–10 of 88 metabolites

Health Effects

No health effects information available for this bacterium.