Pectobacterium atrosepticum SCRI1043

Gram-negativeRodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Pectobacterium atrosepticum strain SCRI1043. This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Genome analysis indicates this organism can fix nitrogen as well as catabolize plant-produced opines. The chromosome also encodes an extensive array of plant cell wall-degrading enzymes such as pectinases as well as all 6 of the known secretion systems. This suggests extensive secretion of pathogenicity determinants such as the aforementioned degradative enzymes but also others such as avirulence proteins. Disruption of the type IV secretion system affected virulence as well, suggesting it is does not simply reflect an integrated plasmid in the chromosome. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium atrosepticum
StrainSCRI1043

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Pectobacterium atrosepticum SCRI1043
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature27
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityYes

Genome Summary

Pectobacterium atrosepticum SCRI1043, complete sequence.

Gene Summary

Adenine Count

1244797 bp

Thymine Count

1238227 bp

Guanine Count

1290827 bp

Cytosine Count

1290168 bp

Genome Length

5064019 bp

Protein-coding Genes

4363 genes

Non-Coding Genes

215 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sty4528 family pathogenicity island replication proteinECA_RS02635Not AvailablePositive597237 - 59843344390.9
pfl_4669 family integrating conjugative element proteinECA_RS02640Not AvailablePositive598803 - 59960029426.7
dna topoisomerase iiiECA_RS02645Not AvailablePositive599600 - 60161575041.4
sty4534 family ice replication proteinECA_RS02650Not AvailablePositive602464 - 60295517634.6
is256 family transposaseECA_RS02655Not AvailablePositive603020 - 60356720333.9
duf29 domain-containing proteinECA_RS02660Not AvailablePositive603654 - 60409116844.7
tcpq domain-containing proteinECA_RS02665Not AvailablePositive604237 - 60555346571.3
type iv pilus biogenesis protein pilmECA_RS02670Not AvailablePositive605553 - 60599915873.3
piln family type ivb pilus formation outer membrane proteinECA_RS02675Not AvailablePositive606013 - 60767759044.8
type 4b pilus protein pilo2ECA_RS23870Not AvailablePositive607688 - 60820618099.6

Displaying genes 671 – 680 of 4578 in total

Metabolites

1999 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 1999 metabolites

Health Effects

No health effects information available for this bacterium.