Stenotrophomonas rhizophila str. QL-P4

Gram-negativeRodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas rhizophila strain QL-P4 is a Gram-negative, nonsporulating rod-shaped bacterium that exhibits chemoheterotrophic metabolism, utilizing organic compounds as energy sources. This strain is categorized as an anaerobe, indicating that it thrives in environments devoid of oxygen. The habitat of S. rhizophila str. QL-P4 is diverse, suggesting a versatile ecological adaptability that may allow it to colonize various niches. Its nonsporulating nature implies that it relies on different survival strategies in fluctuating environmental conditions rather than forming spores, which may limit its resilience compared to sporulating organisms. Given its anaerobic requirements and chemoheterotrophic lifestyle, S. rhizophila str. QL-P4 may play a significant role in nutrient cycling within anaerobic environments, potentially contributing to the degradation of organic matter in soil or sediment habitats. This ability to thrive in low-oxygen conditions may also reflect its potential involvement in symbiotic relationships with plants or other microorganisms, enhancing nutrient availability in those ecosystems. Thus, the ecological implications of S. rhizophila str. QL-P4 merit further investigation to elucidate its role in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas rhizophila
StrainQL-P4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Stenotrophomonas rhizophila str. QL-P4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Stenotrophomonas rhizophila strain QL-P4 chromosome, complete

Gene Summary

Adenine Count

693781 bp

Thymine Count

698133 bp

Guanine Count

1405442 bp

Cytosine Count

1401296 bp

Genome Length

4198652 bp

Protein-coding Genes

3669 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zf-tfiib domain-containing proteinBAY15_RS14595Not AvailableNegative3276335 - 327664611559.7
response regulatorBAY15_RS14600Not AvailablePositive3276809 - 327721014375.3
duf3011 domain-containing proteinBAY15_RS14605Not AvailablePositive3277317 - 327797924963.8
mlic family proteinBAY15_RS14610Not AvailableNegative3278021 - 327870123584.6
nad(p)-dependent oxidoreductaseBAY15_RS14615Not AvailableNegative3278775 - 327960831172.1
acyltransferaseBAY15_RS14620Not AvailablePositive3280098 - 328118039827.0
hypothetical proteinBAY15_RS14625Not AvailablePositive3281441 - 328201320853.7
Trna-lysNot AvailableNot AvailablePositive3282230 - 3282305Not Available
7-cyano-7-deazaguanine synthase quecBAY15_RS14635Not AvailableNegative3282377 - 328304222786.0
7-carboxy-7-deazaguanine synthase queeBAY15_RS14640Not AvailableNegative3283118 - 328381625967.3

Displaying genes 2961 – 2970 of 3777 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

577 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 577 metabolites

Health Effects

No health effects information available for this bacterium.