Rhizobium leguminosarum bv. viciae 3841

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

*Rhizobium leguminosarum bv. viciae 3841* is a Gram-negative, rod-shaped bacterium that thrives in mesophilic temperature ranges, is classified as a heterotroph, and functions as a facultative anaerobe. This microbe is predominantly associated with leguminous plants, particularly in root nodules, where it establishes a symbiotic relationship with its host. This unique association is crucial for nitrogen fixation, a process that converts atmospheric nitrogen into a form that is accessible to plants, thereby enhancing soil fertility. Being Gram-negative, *R. leguminosarum* possesses a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides, which plays a vital role in pathogen defense and structural integrity. The rod shape allows for efficient movement and colonization within the soil and root environments, facilitating its beneficial interactions with plant roots. As a mesophilic organism, it optimally grows at temperatures around 20-30°C, which aligns well with the growing conditions of many legumes. As a heterotroph, *R. leguminosarum* relies on organic compounds sourced from its environment for nourishment. This property aids in its symbiotic function as it utilizes the root exudates from legumes to thrive. Its classification as a facultative anaerobe means it can adapt to both aerobic and anaerobic conditions, an important feature for its survival in the variable environments of soil and root nodules. Beyond its agricultural significance in enhancing plant growth and soil health, *R. leguminosarum bv. viciae 3841* also serves as a model organism for studying nitrogen fixation and symbiotic relationships in plant biology. Its genetic pathways and mechanisms can provide insights into sustainable agricultural practices and bioengineering strategies aimed at improving crop yields without relying heavily on chemical fertilizers.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium johnstonii
Strain3841

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhizobium leguminosarum bv. viciae 3841
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Lens culinaris, Lathyrus oleraceus
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Rhizobium johnstonii 3841, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4866 genes

Non-Coding Genes

90 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
xanthine dehydrogenase small subunitRL_RS18385Not AvailablePositive3750878 - 375234453130.0
xanthine dehydrogenase molybdopterin binding subunitRL_RS18390Not AvailablePositive3752559 - 375489885292.1
xanthine dehydrogenase accessory protein xdhcRL_RS18395Not AvailablePositive3755195 - 375601029039.4
hypothetical proteinRL_RS18400Not AvailableNegative3755986 - 37561777430.88
transcriptional regulator gcvaRL_RS18405Not AvailablePositive3756279 - 375717533187.8
hypothetical proteinRL_RS18410Not AvailableNegative3757263 - 375759512148.6
duf91 domain-containing proteinRL_RS37050Not AvailableNegative3757759 - 375854728228.9
urate hydroxylase puudRL_RS18425Not AvailablePositive3758661 - 375989946386.9
guanine deaminaseRL_RS18430Not AvailablePositive3759896 - 376120648269.8
alpha-hydroxy acid oxidaseRL_RS18435Not AvailablePositive3761330 - 376247241450.2

Displaying genes 3771 – 3780 of 4948 in total

Metabolites

1859 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 1859 metabolites

Health Effects

No health effects information available for this bacterium.