Pseudomonas rhizosphaerae str. DSM 16299

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas rhizosphaerae
StrainDSM 16299

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas rhizosphaerae str. DSM 16299
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas rhizosphaerae strain DSM 16299 chromosome, complete

Gene Summary

Adenine Count

886193 bp

Thymine Count

895758 bp

Guanine Count

1464342 bp

Cytosine Count

1442342 bp

Genome Length

4688635 bp

Protein-coding Genes

4089 genes

Non-Coding Genes

137 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sensor histidine kinaseLT40_RS04575Not AvailablePositive1000284 - 100166650707.3
hdod domain-containing proteinLT40_RS04580Not AvailableNegative1001663 - 100247529930.4
ygfz/gcvt domain-containing proteinLT40_RS04585Not AvailableNegative1002529 - 100347033848.8
succinate dehydrogenase assembly factor 2LT40_RS04590Not AvailablePositive1003597 - 100385110352.6
protein ygfxLT40_RS04595Not AvailablePositive1003835 - 100428716951.8
l-aspartate oxidaseLT40_RS04600Not AvailableNegative1004256 - 100587259316.5
rna polymerase sigma factor rpoeLT40_RS04605Not AvailablePositive1006438 - 100701922269.3
sigma-e factor negative regulatory proteinLT40_RS04610Not AvailablePositive1007050 - 100764320785.4
mucb/rseb c-terminal domain-containing proteinLT40_RS04615Not AvailablePositive1007652 - 100860234204.3
degq family serine endoproteaseLT40_RS04620Not AvailablePositive1008923 - 101030848800.6

Displaying genes 991 – 1000 of 4226 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

89 records
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Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000491D-erythruloseC4H8O4Chemical structure of D-erythruloseNot available
Average120.104Da
Monoisotopic120.0422587Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 89 metabolites

Health Effects

No health effects information available for this bacterium.