Ruminococcus champanellensis 18P13 = JCM 17042

Gram-positiveCocciAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus champanellensis 18P13, also known as JCM 17042, is a type of bacterium that thrives in a warm environment, with a temperature preference category of mesophilic, characterized by temperatures between 20-40°C. It is a chemoheterotroph, meaning it obtains its energy by breaking down organic compounds, rather than producing its own energy through photosynthesis or chemosynthesis. Energy production is achieved through aerobic respiration, utilizing oxygen as a final electron acceptor. The bacterium is comprised of a gram-positive cell wall, featuring a characteristic shape of curved rods or "cigar-shaped" cells. Originally isolated from the gut of a ruminant host, such as a cow or sheep, Ruminococcus champanellensis 18P13 is found in the gastrointestinal tract of these animals, as well as potentially in other body sites across various species. Oxygen preference is aerobic, meaning it requires the presence of oxygen to grow and thrive. In fact, it is an obligate aerobic, which suggests that it cannot survive in the absence of oxygen. Furthermore, Ruminococcus champanellensis 18P13 is a key member of the gut microbiota, playing a crucial role in the degradation of complex plant polymers and the extraction of nutrients from the diet of its hosts. Its unique set of enzymes and metabolic pathways allows it to contribute to the breakdown of cellulose, hemicellulose, and other dietary fiber components, ultimately influencing the host's nutritional status and overall health. Despite its limited cultivation on laboratory media, Ruminococcus champanellensis 18P13 has been extensively investigated due to its importance in the ruminant gut ecosystem. Its enzymes and metabolic pathways have been studied in detail, providing valuable insights into the evolution of gut microbiota and the degradation of plant material.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus champanellensis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus champanellensis 18P13 = JCM 17042

Accession NumberNC_021039.1

Gene Summary

Adenine Count

585343 bp

Thymine Count

584638 bp

Guanine Count

693827 bp

Cytosine Count

649573 bp

Genome Length

2573208 bp

Protein-coding Genes

2325 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+1862839 - 1862851Not Available
Membrane proteinRUM_RS12160Not Available-1869525 - 1872452103906.0
hypothetical proteinRUM_RS08460Not Available-1872427 - 18726879795.5
hypothetical proteinRUM_RS08465Not Available-1872708 - 187312415621.7
phage major tail protein 2RUM_RS08470Not Available-1873186 - 187360814711.0
minor capsid proteinRUM_RS08475Not Available-1873610 - 187395112755.1
hypothetical proteinRUM_RS08480Not Available-1873948 - 187446019039.9
dnat-like ssdna-binding proteinRUM_RS08485Not Available-1874726 - 187522018263.4
Coat proteinRUM_RS08490Not Available-1875223 - 187629338741.5
Putative scaffold proteinRUM_RS08495Not Available-1876309 - 187687820564.2

Displaying genes 1 – 10 of 2390 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

248 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002909O-acetyl-L-homoserineC6H11NO4Chemical structure of O-acetyl-L-homoserine7540-67-2
Average161.1558Da
Monoisotopic161.0688078Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003091GDP-4-dehydro-alpha-D-rhamnoseC16H21N5O15P2Chemical structure of GDP-4-dehydro-alpha-D-rhamnoseNot available
Average585.313Da
Monoisotopic585.052036152Da
BASm0003106D-phenylalanineC9H11NO2Chemical structure of D-phenylalanineNot available
Average165.1891Da
Monoisotopic165.0789786Da
BASm0003276S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6SChemical structure of S-(5-deoxy-D-ribos-5-yl)-L-homocysteine15912-98-8
Average267.299Da
Monoisotopic267.077658Da
BASm0003294GDP-alpha-D-rhamnoseC16H23N5O15P2Chemical structure of GDP-alpha-D-rhamnoseNot available
Average587.329Da
Monoisotopic587.0676862Da

Displaying 31–40 of 248 metabolites