Vibrio vulnificus YJ016

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio vulnificus is a lactose-fermenting, halophilic, gram-negative, opportunistic pathogenic bacterium from the same family as those that cause cholera. It normally lives in warm seawater and is part of a group of vibrios that are called "halophilic" because they are salt requiring organisms.This organism causes wound infections, gastroenteritis, or a syndrome known as primary septicemia.Found in warm coastal waters, this bacterium is related to the cholera pathogen and can cause a severe and potentially fatal illness. Infections tend to occur through eating raw or improperly cooked shellfish, particularly oysters. The ingestion of V. vulnificus by healthy individuals can result in gastroenteritis. The "primary septicemia" form of the disease can follow.Wound infections result either from contaminating an open wound with sea water harboring the organism, or by lacerating part of the body on coral, fish, etc., followed by contamination with the organism.Persons who are immunocompromised, especially those with chronic liver disease, are more at risk from Vibrio vulnificus. There is no evidence for person-to-person transmission.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio vulnificus
StrainYJ016

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Vibrio vulnificus YJ016
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityYes

Genome Summary

Vibrio vulnificus YJ016 plasmid pYJ016, complete sequence.

Gene Summary

Adenine Count

14290 bp

Thymine Count

12425 bp

Guanine Count

10024 bp

Cytosine Count

11769 bp

Genome Length

48508 bp

Protein-coding Genes

56 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
molybdenum cofactor biosynthesis protein bBJE04_RS06045Not AvailablePositive1215827 - 121633918607.0
cyclic pyranopterin monophosphate synthase moacBJE04_RS06050Not AvailablePositive1216350 - 121682917093.9
molybdopterin synthase sulfur carrier subunitBJE04_RS06055Not AvailablePositive1216826 - 12170718731.36
molybdopterin synthase catalytic subunit moaeBJE04_RS06060Not AvailablePositive1217073 - 121752816969.9
abc transporter substrate-binding proteinBJE04_RS06065Not AvailablePositive1218085 - 121971660676.8
oligopeptide abc transporter permease oppbBJE04_RS06070Not AvailablePositive1219820 - 122074033775.5
oligopeptide abc transporter permease oppcBJE04_RS06075Not AvailablePositive1220758 - 122166033500.9
abc transporter atp-binding proteinBJE04_RS06080Not AvailablePositive1221689 - 122266036051.2
murein tripeptide/oligopeptide abc transporter atp binding protein oppfBJE04_RS06085Not AvailablePositive1222657 - 122365236455.6
glutathione s-transferase family proteinBJE04_RS06090Not AvailablePositive1223839 - 122479837084.8

Displaying genes 2761 – 2770 of 4831 in total

Metabolites

1933 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 1933 metabolites

Health Effects

No health effects information available for this bacterium.