Paenibacillus graminis str. DSM 15220

Gram-positiveRodMotileaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus graminis str. DSM 15220 is a Gram-positive, rod-shaped bacterium that exhibits the ability to sporulate, indicating its potential resilience in various environmental conditions. As a chemoheterotroph, this microbe derives its energy from organic compounds, which it metabolizes in its natural habitat—soil. The sporulation capability of P. graminis suggests an adaptive advantage, allowing it to survive periods of nutrient scarcity and unfavorable environmental conditions. This trait is particularly significant in soil ecosystems, where fluctuations in moisture and nutrient availability can be pronounced. While specific ecological interactions of P. graminis str. DSM 15220 are not detailed, its presence in soil environments points to a potential role in nutrient cycling and organic matter decomposition, both critical processes in maintaining soil health and fertility. The ability to utilize a variety of organic substrates may enable this bacterium to contribute to the microbial diversity and functionality of the soil microbiome. Overall, the traits of Paenibacillus graminis str. DSM 15220 highlight its potential significance in soil ecosystems, where it may play a role in enhancing soil structure and nutrient availability through its metabolic activities.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus graminis
StrainDSM 15220

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Paenibacillus graminis str. DSM 15220
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipNot Available
Host(s)Zea mays
Cell arrangementNot Available
SporulationSporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Paenibacillus graminis strain DSM 15220 chromosome, complete

Gene Summary

Adenine Count

1767104 bp

Thymine Count

1775350 bp

Guanine Count

1813706 bp

Cytosine Count

1810304 bp

Genome Length

7166464 bp

Protein-coding Genes

6085 genes

Non-Coding Genes

218 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ubix family flavin prenyltransferasePGRAT_RS19915Not AvailableNegative4643138 - 464374021774.7
ubia-like polyprenyltransferasePGRAT_RS19920Not AvailableNegative4643737 - 464461232562.8
demethylmenaquinone methyltransferasePGRAT_RS19925Not AvailableNegative4644605 - 464535728283.6
heptaprenyl diphosphate synthase component 1PGRAT_RS19930Not AvailableNegative4645361 - 464623033138.3
hypothetical proteinPGRAT_RS19935Not AvailableNegative4646345 - 464688420024.3
trp rna-binding attenuation protein mtrbPGRAT_RS19940Not AvailableNegative4646996 - 46472449031.71
hu family dna-binding proteinPGRAT_RS19945Not AvailableNegative4647363 - 46476359696.59
stage iv sporulation protein aPGRAT_RS19950Not AvailableNegative4647916 - 464939455203.1
hypothetical proteinPGRAT_RS19955Not AvailableNegative4649778 - 465053327966.5
2fe-2s iron-sulfur cluster-binding proteinPGRAT_RS19960Not AvailableNegative4650576 - 465094413256.0

Displaying genes 4151 – 4160 of 6303 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

337 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 337 metabolites

Health Effects

No health effects information available for this bacterium.