Roseibium aggregatum

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Stappiaceae

Genus

Roseibium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyStappiaceae
GenusRoseibium
SpeciesRoseibium aggregatum
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatPHB film surface suspended in the water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Labrenzia aggregata genome assembly

Gene Summary

Adenine Count

1379432 bp

Thymine Count

1375544 bp

Guanine Count

1967935 bp

Cytosine Count

1972384 bp

Genome Length

6696127 bp

Protein-coding Genes

6153 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-2,4-diaminobutyrate decarboxylaseLAL4801_02251P17770Positive2422571 - 242398952537.5
ureidoglycolate lyaseLAL4801_02252O06724Positive2423986 - 242484031817.7
2-hydroxyhexa-2,4-dienoate hydrataseLAL4801_02253Not AvailablePositive2424837 - 242564328776.5
4-hydroxy-2-oxo-heptane-1,7-dioate aldolaseLAL4801_02254B5FR34Positive2425655 - 242644327309.0
putative l,d-transpeptidase ynhg precursorLAL4801_02255Not AvailableNegative2426795 - 242745724360.1
2-dehydro-3-deoxygluconokinaseLAL4801_02256P44482Negative2427629 - 242856733406.8
putative hth-type transcriptional regulator ydfhLAL4801_02257Not AvailableNegative2428570 - 242926225945.3
uronate isomeraseLAL4801_02258Q92V04Positive2429355 - 243079754272.6
extracytoplasmic solute receptor protein yiaoLAL4801_02259Q128M1Positive2430821 - 243180135985.8
trap-type c4-dicarboxylate transport system, small permease componentLAL4801_02260Not AvailablePositive2431924 - 243245118920.4

Displaying genes 2271 – 2280 of 6015 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

367 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 367 metabolites

Health Effects

No health effects information available for this bacterium.