Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamyl-trna reductase | IW01_04685 | Not Available | Negative | 1031917 - 1033173 | 46341.8 |
| membrane protein | IW01_04690 | Not Available | Positive | 1033405 - 1034028 | 23744.4 |
| kinase | IW01_04695 | Not Available | Positive | 1034032 - 1034904 | 31946.1 |
| ribose-phosphate pyrophosphokinase | IW01_04700 | Not Available | Positive | 1035042 - 1035989 | 34365.5 |
| hypothetical protein | IW01_04705 | Not Available | Negative | 1036289 - 1036558 | 10295.8 |
| peptidyl-trna hydrolase | IW01_04710 | Not Available | Positive | 1036873 - 1037460 | 21216.8 |
| gtp-binding protein | IW01_04715 | Not Available | Positive | 1037590 - 1038681 | 39677.4 |
| beta-lactamase | IW01_04730 | Not Available | Negative | 1040557 - 1041630 | 40622.1 |
| hypothetical protein | IW01_04735 | Not Available | Negative | 1041863 - 1042456 | 21676.7 |
| hypothetical protein | IW01_04750 | Not Available | Negative | 1044321 - 1044608 | 10877.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
