Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome b562 | IW01_04585 | Not Available | Negative | 1005549 - 1005944 | 14033.8 |
| peroxiredoxin osmc | IW01_04590 | Not Available | Negative | 1006252 - 1006680 | 15097.0 |
| expansin-yoaj | IW01_04595 | Not Available | Positive | 1007000 - 1007689 | 25261.2 |
| srfa | IW01_04600 | Not Available | Positive | 1007978 - 1009390 | 49959.8 |
| virulence factor srfb | IW01_04605 | Not Available | Positive | 1009393 - 1012380 | 112499.0 |
| virulence factor | IW01_04610 | Not Available | Positive | 1012377 - 1014839 | 92168.0 |
| hypothetical protein | IW01_04615 | Not Available | Positive | 1015740 - 1016858 | 42005.0 |
| sugar abc transporter substrate-binding protein | IW01_04620 | Not Available | Negative | 1017067 - 1018386 | 48600.0 |
| dehydrogenase | IW01_04625 | Not Available | Negative | 1018498 - 1019793 | 48950.8 |
| cysteine methyltransferase | IW01_04630 | Not Available | Positive | 1020427 - 1020966 | 19900.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
