Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | IW01_10860 | Not Available | Positive | 2374290 - 2374538 | 9098.82 |
| hypothetical protein | IW01_10865 | Not Available | Positive | 2374538 - 2374846 | 11447.3 |
| Putative exonuclease | IW01_10870 | Not Available | Positive | 2374846 - 2375415 | 20727.5 |
| hypothetical protein | IW01_10875 | Not Available | Positive | 2375412 - 2375693 | 10034.2 |
| Replication protein | IW01_10880 | Not Available | Positive | 2375690 - 2377996 | 86851.6 |
| hypothetical protein | IW01_10885 | Not Available | Positive | 2377989 - 2378366 | 14246.3 |
| Hypothetical protein | IW01_10890 | Not Available | Positive | 2378366 - 2378704 | 12847.5 |
| Hypothetical protein | IW01_10895 | Not Available | Positive | 2378863 - 2379084 | 8330.99 |
| hypothetical protein | IW01_10905 | Not Available | Positive | 2379768 - 2379968 | 7447.99 |
| Baseplate assembly protein v | IW01_10920 | Not Available | Positive | 2381831 - 2382466 | 22214.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
